result

Gene information

Detail information of AfisC3G04300

Location

Gene	Chr	Start	End	Strand
AfisC3G04300	chr3	774119006	774120270	+

Sequences

CDS

Protein

Gene

>AfisC3G04300
AGGATATTCTGGTAATTGCACAGCTAAAAGAAGACCAGAGCATGTATTCCAACACCGTTAAATATCGGAAGCTTGGCTGTGCATCTTCACTTTACTCTTTCATTCTTCCAAAACCATTCAATTTTTAAATTTCTAAAACCCCTCGTTTCTAAAACCCAAATTCGCATGTAAATTATTTCCAAAACTCAAAATGAATACAAATCTATCTACGCACGTAATCCACTTCAGAACGCGCGTGGGTTCGAAATCCAAGCTCAAAACCAAGCTAATCCGAATCACCTATTCAGACCCAGATGCAACCGACTCAGACTCCGACGGCGGTGATCCTTCTCGTCGACATGTTAAAAAGCACGTGCACGAAATCAAGCTCGAACCAACAACCCGCGCTTCATCCACGACGGCGGCCCGCCGGAATCCAGCAAAGAAGCAGATCGCTCCGAAGGTGGACTGGAATCGGTTCCGCGGGGTTCGCCGGCGTCCATGGGGTCGGTACGCAGCGGAGATCCGAGATCCGAATCAGAAGAAGCGGCTCTGGCTCGGCACCTTCGATACAGCGGAGGAGGCGGCGATCGTGTACGATGAGTACGCCGTGAAGCTGAAAGGGAGCAAAGCGGTGACGAACTTTCCGTTAGATCGGAAGGCGACGCAGGCGAAAAGGACGGAGGAAGCGTTGGATTTGGCGTCGCCGACGTCGGTGTTGAGGGGTGGGGCGGAGCATGTATCGCCGTTCGAAGAGATGTTTTTTGGGGACGTGGATGTGTTGGGGATGAGCGTGGATCCGCCGTTACTTTTAACGGGCGTTAGTTTTGGGGTTAATGTTGTGACGGAGGAGAAGTTTAAGGATTTCGATCCTGCCGATTTTATGCTTGATAATTCGGTACCTTGCGCATAGATATGATTATTGTTTAAACAAATTATGTGAGTAATTAGATTATTTAAGATAGTATTATGAATAGGTAATTAAGAAGCGCAAGAGAGGCTCAGTTTTGATAAGGTTTGAAGCTTTAAATGTTTTAAGTAGTTTAGTATGTTATTTGGGAGTTGTTTCAAGTGTGCAAATCTTGCGAGTCTGACGTTTGATGTAGTGGGAAGTAGAGTTTGTGGGAAGGTTCACGTTATATGTTTTTCCATCTTTGGTTTTTATTACTATGGTTTGACTTGGCCTGGTAGATGCTTCGTGAGTTAGCTGTTCATCTTAATATGGATGATTTAGGTGATTTGCTGATATAAAGGAGAATAATATTATGCCACACTTTTGAATCTCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020594495.1	5.1e-47	pathogenesis-related genes transcriptional activator PTI6-like
Swissprot	O04682.1	6.2e-34	PTO-interacting protein 6
trEMBL	A0A455LAF5	3.4e-45	Ethylene-responsive transcription factor ERF-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G27950.1	42.29	1e-29	126	CRF4	cytokinin response factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04300	AT4G27950.1	175	71	6	25	170	41	214	42.29	1e-29	126
AfisC3G04300	AT5G53290.1	146	55	4	25	147	37	182	46.58	3e-26	115
AfisC3G04300	AT4G11140.1	179	79	5	25	180	11	183	39.66	2e-24	109

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	89	138	47.3	1.6e-12

Gene Ontology

Accession	Ontology	Name
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0009880	P	embryonic pattern specification
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009536	C	plastid
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0051301	P	cell division

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13434	PTI6; pathogenesis-related genes transcriptional activator PTI6	EC:-	Plant-pathogen interaction	ko04626
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network