result

Gene information

Detail information of AfisC3G04390

Location

Gene	Chr	Start	End	Strand
AfisC3G04390	chr3	792171310	792175311	-

Sequences

CDS

>AfisC3G04390
ATGGGAATTCCCTGTTCCAAACCAAACAGAGAAAAAGATAAAGACGATGAGATCAGGCCTAACTCAGAGAAATCAGAATCAGAAGAGTCGTTAAGTAGTAAAAAACAGGATGTAGTGGATCACCAACAGAATAATGTAAGTAGCCGAACTCCACAAAGCAATGCTAAAAAATTTACTTATGTTGAATTGGCTGTTGCGACCAATAACTTTGATACTGATTGCCTTTTGGGAGAAGGTGGATTTGGTCAAGTTTACAAAGGAAAATTAGAGATCACAGGCCAGGTTGTGGCTATAAAACAACTTAATCTTAACGGTCATCAAGGAAATAGGGAATTTTACGTCGAAGTAATGATGTTAAGTATGCTTCATCACCCTAATCTTGTCAACTTGATTGGTTGTTGCGCTGAAGGTGAACAACGACTTTTAGTCTACGAGTACATGCCACTTGGATCAGTAGAAGGCCATCTTTATGGATTTAGCTCAGATAAGACACCGCTTGACTGGATTACACGGATGAAAATAGCTACATGTGCCGCCAAAGGATTAGAGTATTTGCATGATAAAGCAAACCCACCAGTTATATATCGAGATATGAAATGTTCCAATATCTTGCTTGAGGAAGGATATAATGCAAAGTTATCAGATTTTGGATTGGCTAAACTAGGACCAGTTGGTGATAAAACTCATGTGTCAACTCGAGTTATGGGAACCTACGGATATTGTGCACCTGAATATGCATTGACAGGACAATTGACTGTCAAATCTGATATATACAGTTTTGGGGTAGTGCTTTTGGAACTTATCAGTGGGAGGAGAGCAATCGACTTAAATAGGCCTAAGCAAGAACAAAATCTTGTTACCTGGGCACAGCCATTATTCAAAGATAGGACCAAATTCCCTCTAATGGCAGACCCATCACTCCGAAGCAACTACCCAAGAAGAGCACTTTATCAAGCTTTAGCTGTAGCCGCAATGTGTTTACAAGAGGATCCAAATATAAGGCCAAAAATTGCCGATGTTGTCACTGCGCTCGTTTACCTTTCTACTCCTAATCCTGAATCGCGGAAATCTGACAACCCATCATAA

Protein

Gene

>AfisC3G04390
TTCTCTTCGTCTTTTTTTCTTGATTTCCTTCTAATTTCACACACATCATTTTCTCCCTCTGAAAATGGGAATTCCCTGTTCCAAACCAAACAGAGAAAAAGATAAAGACGATGAGATCAGGCCTAACTCAGGTATTTCCATTTTACAAATAATTCAGAATCTGTGTACTTATTTTCTTCTCCGCTTGCGATCTTCTTAAGAATTTTGATTTGATGTTTGTTCTGTAATATTTCGAATTTCGATTTCGGGCTCGATTTTCATGATTTGAGCATAAAGTTTGTTCTTGTTGGCATGAGCATGTTTCAGGCTTAGCTATCTTTGATTATTGAAAAGATCAAATATTCAATGGTTAATCTATTTTCACATCATTTGGGTTTTTTTTTTCTTCTTCTTCTTCTGAACTTGTGATTGAATTTAAAATCTTGTTTCAGTTGATTATCCAATTTATTTTACTGCTAAATGTCACATTTAAGTATAAATCATCTGTGAGAAAGAATACTCATGTTAATATCTTGTTCTTTCTGATGAAAATGGTACAAAGTCACCAGGGAGATGGAAGACGATTAATTAGCAGTCGCACACTGTGATCCATGATAATATATCTAAACCACCCTAAGAATTTTCTGGGTTTGAAAGAATCCTTGATTAGATGTTGACAATTTTCACTTCTATGAAATGCTCCACGTACAAATATAAATCTTCATTGCCATGACTTATCATTTGAAAGTGGAAACATATTTCTCAGTGGCTTGTTATGAACAAAATCATTGTCTTTTTCACTTATGTTCCAATAAGGATGTAAACTATGTATCCAAATTCAAAGAAAGTAATATATGCTAATAATTTCTTTTGCCTTGATTTTTCGAAAATCAAACACATCATTTTCTATTGTATACATCAAACTCATTGTTGTCTATTGTATAATGGTTACTTTGTAAGTCCTACAATAAATGGATCTTTATATTCTTAAATATGTATTCCACAACGCTTTGAATCCACACATGCTTAACTTTACTGCCAATTTTATAAATTGTTAGAATCTCATTTTTACGATTTCTTTTGACAGAGAAATCAGAATCAGAAGAGTCGTTAAGTAGTAAAAAACAGGATGTAGTGGATCACCAACAGAATAATGTAAGTAGCCGAACTCCACAAAGCAATGCTAAAAAATTTACTTATGTTGAATTGGCTGTTGCGACCAATAACTTTGATACTGATTGCCTTTTGGGAGAAGGTGGATTTGGTCAAGTTTACAAAGGAAAATTAGAGATCACAGGCCAGGTATTTTTAACTCTGGTGAATTGTTTGATGGTACTAATCTTGGTAAAACAATTAACCTAACGAATGTTTATTATATCGATAGGTTGTGGCTATAAAACAACTTAATCTTAACGGTCATCAAGGAAATAGGGAATTTTACGTCGAAGTAATGATGTTAAGTATGCTTCATCACCCTAATCTTGTCAACTTGATTGGTTGTTGCGCTGAAGGTGAACAACGACTTTTAGTCTACGAGTACATGCCACTTGGATCAGTAGAAGGCCATCTTTATGGTATGTAATCCATTAGTATTTGGTAATTTTCTTGTGTGACAACGTTTCAAGTTTCCTGTAGTTTTTGGGTTATTTTCTTTAACTAGTGCTTTGCATTTGCAATGCGCAGTTGTGAAATAAGTCCATTGTAAAATGCAATATAATGTTACAAAATATTAGGTGGAAATTATCCGAATATGCATTTATCATTATATTTTCCGTTCTAAATTAGAATGATATAATAATATCTATATTAAACTATTTTTTTCCCACTCCAAATTAATATGCATGAGGTATATGTAGTAAAATATTCCAAGTTAATTAATATTTTTCTCAATTTGTATTCTTGAAATCAACAATTCTGACAAATTTAAATTTATTGAACCATAGTCGCTCACTGAATCGCTCTTAATCTTTTAGTAAGGTCAAGTCTTGACCACCATTTATCTTTTAAAATATATTTTGTCCATCCACTTCAAAGCATCATTCTTCCTTGTTATATCGATTAGATTGGAATTTTAGCATGACTATTCTTTGATCATTGACTGCACAAGTATTTTATTTTAACTCCTCAAGCAACTTTGTTAAAGTGTGAAGAAATATTACTGTATTATGGGTGACTGTAAGTGAGATTCAGTGGAAAAATACTTTTATCTTTATTTTCTATCAAAATAATTCACCTTTTATGGCATAAAGCTTACATGATGACTATGACATGAAAAGTAGAAAATTAAGTAATATTAATATTTTTCTTGATGTAGGATTTAGCTCAGATAAGACACCGCTTGACTGGATTACACGGATGAAAATAGCTACATGTGCCGCCAAAGGATTAGAGTATTTGCATGATAAAGCAAACCCACCAGTTATATATCGAGATATGAAATGTTCCAATATCTTGCTTGAGGAAGGATATAATGCAAAGTTATCAGATTTTGGATTGGCTAAACTAGGACCAGTTGGTGATAAAACTCATGTGTCAACTCGAGTTATGGGAACCTACGGATATTGTGCACCTGAATATGCATTGACAGGACAATTGACTGTCAAATCTGATATATACAGTTTTGGGGTAGTGCTTTTGGAACTTATCAGTGGGAGGAGAGCAATCGACTTAAATAGGCCTAAGCAAGAACAAAATCTTGTTACCTGGGTAAATATTTTTTCTCCTCTTTTAATGAAATCGAATCATTTTCAGTTGGTGGTTTTTTCTACTTTCGCTTCAAATATGTTGATGGTACTTTCAGTCTCCAACACAGATTTAGTTGTACAACTTATCTGCATTCAAAACATATTCTTAATACATAGCTCATTGTAATAATGCCTAGGTTTAATCCGTTTGAAATGCCTGAGCTGGGCTTTTACAGTCAGCTGATGAACAAAAATAGAAAAAAGAAACTACAAATACATCATTATTTCTTTCTTTGAGGTGTAAGATTTAGAACATTTGTAGAGTTCAATGAAAAGTTCCAGTATTATAACACTACTTTAAATCCTGCATGACTGCCAGAACAATGTAGGAGATACTGATATATTTTGAGTGAAATTATCGAATTTAACTCCATAAAGTCATAGCCGAACAATTTATTGCACGAGGGGCTATGAAGGTAGGCTTATTGTTTCGCTTTATAATCCGTTTTATGTGCATAAATTATGGTGTATACTAGTTTTTTCAATTTTTTGGTGTATGATATGCAAATCGTCTTGTATGAGTAAAATTTAATGTACATAAATTAGTAACCAAGGTCCTTTCATTCATAAAGTGCGACCAAATTGAAATTTCTATTTGCACATATATTTGTGACATGAAACCTATTAATAAGCAATCATATTGTCCAAGATAAATCTTCAAAATGACCACAATATATTGATTTTAATCAGTTATAGGTCTTATCGACCAGACATGCACAGATGCACCTTTTCCTGAAAATCTATTTGCGTGTAGTGTTCAGATATGCAAACATTATAACTAATGTTGTGGTTGCAGGCACAGCCATTATTCAAAGATAGGACCAAATTCCCTCTAATGGCAGACCCATCACTCCGAAGCAACTACCCAAGAAGAGCACTTTATCAAGCTTTAGCTGTAGCCGCAATGTGTTTACAAGAGGATCCAAATATAAGGCCAAAAATTGCCGATGTTGTCACTGCGCTCGTTTACCTTTCTACTCCTAATCCTGAATCGCGGAAATCTGACAACCCATCATAATACAAAAAATGATTGCTTGCATGGGAGATTGTAGCTAGAAGAGTTATTTCTTCAGATGACGATGGAAGCATATCGCTTCATTAGATGAAGGTTTAACTTTGTTATTAAGTTGTATATCCATATGTATTCTGGCTCATTGGACAGCTTTTTATTTGCTGCTGTTCTTTTTTGGTTATGAGACATTGGAGAGATGCATACTGCATGTTGCGTGAATCTCGTATGGATATAGATATTTTACTGAAATAAATTTGATTTTGCTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252637.1	1.0e-134	probable serine/threonine-protein kinase PBL7 isoform X2
Swissprot	Q1PDV6.1	7.9e-129	Receptor-like cytoplasmic kinase PBL27
trEMBL	A0A5P1FK15	7.2e-135	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18610.1	75.93	6e-135	477		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04390	AT5G18610.2	295	71	0	55	349	68	362	75.93	6e-135	477
AfisC3G04390	AT5G18610.1	295	71	0	55	349	68	362	75.93	6e-135	477
AfisC3G04390	AT5G02800.1	349	116	1	3	349	4	352	66.19	5e-131	464

Ortholog group

Species	Genes
Allium cepa	g409242.t1
Allium fistulosum	AfisC3G04390
Allium sativum	Asa2G03439.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	75	341	157.2	4.6e-46

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network