result

Gene information

Detail information of AfisC3G04440

Location

Gene	Chr	Start	End	Strand
AfisC3G04440	chr3	798015828	798019196	-

Sequences

CDS

Protein

Gene

>AfisC3G04440
ATGTCCATTCCATTATCCCTCCTCTTATTCTTCTCTCTTCTTGTTTCTTCCTTGAACTCCAAACCATGTCCACCATGCGGCACAACTCCGGTTCCATACCCGTTAAGCACAAACCCTTCATGCAACGACCCATCTTACCCGATAACATGTTCATCCAACTCCACTCTCATATTCAACGCGCTCAACTCCTCATCCTACCCCATATCTTCGGTTTCGCCCTCTACTCAAAGGCTAGTCATACAACCCGCTCCGTTCAGGCCCAACACTTGTGTCACAACCGACCTGCATTCTCAGGGCATCGCACTTAACGCTTCCATGCCCTTTAACGTCTCCAGCAGCAATACAATCATGCTGTTAAACTGCTCTGCGAGGGTCTTGCTTTCACCCTTGAACTGCTCGAGCAATAGTCTCTGCCATGTTTATGTTAACGCTACTCCTGCTGCCTCCGCTTGTACACAGCTTCCCATTTGCTGCACTTTTCAGGTACCCTTAACATAGAAATACGTTTTCCCCCCCTTATATATTGATTTTATAGCTTTGTTTATGTAAAACAGGCGGGAGGGTCATCCACAGCATATGCTGTAAGGGCTAGCGGAGTAAATGGGTGCAGTGCTTATAGGAGCTTTGTTAATTTGAACCCGTTAACAAGACCAAACGGTTGGGGAAGTATGCAGGGAGTGGAGTTGCAATGGGCCACGCCTCGTGAACCCGTTTGTCGAACACAAGTGGACTGCGAGGATGGAGTCAATGCCACGTGTAAGGTGGATGTTGCAAGTGGGAATGGGATCAAACGGTGCTTCTGTAATCAAGGTTTGACATGGGATCCTATTAATGGCACCTGTGCTCTCAGTAAGTAGTCGTCAATCTTTCTACTTCTGTTCTTCATCATTTAGTTTGATAATCTGTTCTTCATCAGTAAGTATTTTGAATTTGATAATCTGTATTGACTATTAACTAACAAACAAACAATTGAAAAGTGGTAGTAAGGTTTTGCTGGTATTGAAATAGTTTGCTGACTTTGTTTCCCTTGTTGCTTTGAAGTTAAAACAGGGTGTGAAGCAGATGGTAGCTGTAAGTCAGCAAACAGAGCACCTCTAATTGCAGGTCAGATTTGAATTCTTTATTCAAAAGTAATTTTATTCGTTGAAATTGACTTTGAATCATTCAATGAAGTTGGCAGAACAAGACTCTAACTAGAGTTCAAGATATATTTTCTTTTTTTATTCAAGCATTCAAACATTTAGAATAAAATTTTGGTAGATTCTTTGAATTCAACAAACTTACAGTTGCATAACATTTTAGAATTCATATGGTCAAGTCTTGTACAGTAAGCATGATAGGAACAATAACTACCCATTACAAGCTTATAACTTTATGTTAGCACTTTGTTTAGTTGGTTATTTTATATACAAGTCTGGTTCATTCAATGCTAAAAAATAATTTGATCAATAGAAAAGCAACATGTAATCAAGTGGATCACCCACCACTGGTAAATTATAAAATTAAATAAAGCAGAATAATTATGATATGGATCGATTTGGTGAATACAACAACCAACTTCAGAAACATTGACCCTAAATTTGAATAGTAGATCCCTTATTACCTAGCTACATATAAGACCAGTTAGATGAACTTTCTTGATATATTTTTTTTGTGCAACTATATACCATCCACGTTTCATCTTCATTCACTCACGAGTTCGTAAAAAATTAAATTTAAAACTAAAAACTTCATTGCATGTGACGAGATCTCTAGCATCCACATCTCAAAGTGATAATCTTCGATTCACATGCTAGATAGAGACTTTTACAAAATCGACACTTGGCTTTGGGTGAGTGCATAATGATTTTTATTATTGTTCAAGTGGCATTATGGATGAATTTGTCACTTTTCTTTAACATAAATGCTAGAAGACCCGAAACAAATTAGGGCAAACTGTCATACATGGGGATAAAAAATTATGGAAGCCCTGAATTCCTATTTTTCCTCAATTTTTTTTTCTATTCTGACTTTCCTGGCCTCGGATACTTTTTTTTAAAACCCTGAGTAAATATTTTTCGATTTGCATATATCTAATTCCAGATTCCTTATATACAATACATACCAGGTTTAATATGCGGGATAATAGTAGCAGCACTCCTTGCCACCGCCTTCTTCTTCCTCTACCGTCGCCAGCGTCGCATCAGAGAAGCACGTGAACGCATTGCAAAGGAAAGACAAGACATTCTTAACCTCAACAACTCTAGTGGTCGTTCTGCTAAAAACTTCACTGCACGCGACCTGAAGCGTGCCACCTCAAATTTCTCAAATGAAAACCTTCTAGGCATTGGAGGCTACGGTGAGGTCTACAAAGGACATTTAGACGACGGAACCCTTATCGCAGTCAAATGTGCCAAATTGGGAAACACGAAATCTACTGATCAAGTCCTAAATGAAGTCAGAATACTCTCACAAGTTAATCATAGAAGCCTCGTTCGCCTTCTAGGCTGCTGTGTCGACCTCGAGCAACCTCTCATGGTCTACGAATTCATTTCAAATGGTATGTATTACATTGATCTGCACTATAAGTATAGTCCGATCACTATAAAACACCTTTTGTTGAGATTTACTTGTTACAGCAGTAATTTAGTAAATATGCAGTAGAGAGTTAAAAGTATCCAAATAATTTATTCAGTGAATTATCTCTATAAAACACCTTATGTTGAGATTTTTTGTTGATTGGAATCATTTTAAATAGGTACACTATATGACCATCTTCATGGGAACCTTCAATCGCCGATTTTAACATGGAAAAGGAGACTTGCTATAGCATATCAAACAGCAGAAGGACTAGCTTACCTGCACTCATCTGCAGTGCCTCCAATTTACCACAGGGACGTAAAATCAAGCAACATTTTACTGGACGATAAATTCAATGCAAAGGTGTCGGATTTTGGGCTTTCTAGACTGGCCGAGCCAGGGCTCAGCCATGTGTCGACCTGTGCACAGGGGACGCTTGGGTACCTCGACCCAGAGTATTATAGGAATTACCAGCTGACTGATAAGAGCGATGTGTACAGTTATGGAGTGGTGCTTTTGGAGCTGCTGACTTCGAAGAAGGCGATTGATTTTGGGAGGGGGATGGATGACGTGAACTTGGCAGTGTATGTGGGTAGGAAAGTGGAGGAAGATAGATTGATGGACGTTGTTGATGGGTCGTTGAAGGAAGGGGCGACTACGGTGGAGTTGGATACGATGAAGGCGATAGGGTTTTTGGCAATGGGGTGCTTGGAGGAGAAGCGGCAGAATAGACCGTCGATGAAGGCAGTGGCGGAGGAGATTGAGTATATTATGAGTATTGAAACTGGCGGTGGAGAGAACAATAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010937552.1	5.6e-258	wall-associated receptor kinase-like 20 isoform X1
Swissprot	Q9LZM4.1	3.3e-170	Wall-associated receptor kinase-like 20
trEMBL	A0A6I9S5R8	4.0e-258	wall-associated receptor kinase-like 20 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G02070.1	52.44	0.0	635		Protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04440	AT5G02070.1	616	271	10	23	625	43	649	52.44	0.0	635
AfisC3G04440	AT3G53840.1	646	290	12	2	623	10	636	48.45	6e-170	594
AfisC3G04440	AT1G69730.1	408	210	9	241	622	319	721	40.93	1e-82	304

Ortholog group

Species	Genes
Allium cepa	g540917.t1
Allium fistulosum	AfisC3G04440
Allium sativum	Asa2G03790.1
Arabidopsis thaliana	AT5G02070.1
Oryza sativa	LOC_Os05g25390.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13947.3	GUB_WAK_bind	Domain	22	122	34.3	3e-08
PF07714.14	Pkinase_Tyr	Domain	349	618	157.4	3.6e-46

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0006952	P	defense response
GO:0004383	F	guanylate cyclase activity
GO:0005576	C	extracellular region
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005618	C	cell wall
GO:0006182	P	cGMP biosynthetic process
GO:0009311	P	oligosaccharide metabolic process
GO:0009617	P	response to bacterium
GO:0009620	P	response to fungus
GO:0009751	P	response to salicylic acid
GO:0009826	P	unidimensional cell growth
GO:0009992	P	cellular water homeostasis
GO:0046777	P	protein autophosphorylation
GO:0048527	P	lateral root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network