result

Gene information

Detail information of AfisC3G04457

Location

Gene	Chr	Start	End	Strand
AfisC3G04457	chr3	800561779	800564806	+

Sequences

CDS

>AfisC3G04457
ATGGTTAAAGTTTCTACAAAGAAAAAAAAAATCACTTCAGTCATGTTACTGAATTTTGTAATATCTATCCTCCTCCTAAAACTTGCTTCATCTTCTAACACTACTAATTTCATCTTCAACAAATTTAACCCCACTGACTTGACTCTGTATGGATTATCAGAGATTACAGACAGTGGCCTTCTCCAGCTCACAAACAACACAATTCTTCAATCCGGCCTTGCGTTTTATCCACACCCTATTCAATTCAAGCGCAAATCCTTTCATACAACCTTCATCTTTGCAATAGTACCGGAATACCCTAATATAAGTAACCATGGCATGACCTTTCTAATCTCCTCAACTAAAGAGATTACGGGTACACCTGGTCCTTTCTTCGGAATCTTCAATGAGACGAATAAATTCAACTCGAGTAACCTGTTAGCAATTGAGATGGATACCAGCATGACCATAGGATTCAAAGACATAGATAACAATCATATTGGAATTGATGTCAACAGCATTAGATCGGTGAATTCTTCATCAGCTGCTTATATTGATGCTAACAAGGAGTACAAGAGTATGAATCTTCCAAGTGGAGATTCTATGCAAGTTTGGATAGACTGCAGTGGCACAAATATTGAAGTTAGAATATCGCCTATTGGTGCTTCTAGGCCAAACATAGCATTAGTGTCATCGCAACTTAATCTTTCTTCTGTACTTTTGGACGAAATGTATGTAGGGTTTTCGGCATCTACAGGAGACGTTACAGCTTTTCATTATGTTCAGGAATGGAGTTTCAGTTTGAATGATGATGCTGAAGCTCTTGACATCGAACATATTCAACCTATTCCTCGTCAATTTAACACAGAAAAGCATTTGCAACCTATAACCGTTGCATTGCCGTTCGTTGGAGTGATTATTTTGCTCGTTTTACTGTTTGTTGCTTATTTTATTATCAAAAGAAAAAGGAAATTCTCTGAGTTATTAGAGGACTGGGAAATTGAATATGGACCTCATAGGTTCACATACAAAGATCTTTTCAAAGCTACAAAAGGCTTTCATGAAGATAATCTTCTCGGGGTAGGAGGATTTGGTAGAGTCTACAAAGGGGTGCTTCCAAAATCAAATCTTGAAATTGCCGTGAAGAAAATATCTCATGAATCACAACAAGGAATGAAAGAATTTGTAGCAGAAATAGTGAGCATGGGGAGGTTGAGGCATAGAAATCTAGTACAACTTCTTGGCTACTGCCGAAGACAAGGAGAGCTCTTACTGGTATACGAGTTCATGCCCAATAGTAGTCTCGATAAATTCTTATTTGGTGACAAAAAGGCAACACTGAACTGGAAGCAAAGGTTTCAAATAATAAAAGGAGTAGCATCAGGACTTCTATATTTACACGACGGGTGGGAGCAAGTGGTCATTCATAGAGACATAAAGGCAGCAAACGTTTTGCTAGATTACGAACTAAATGGAAAACTAGGTGATTTTGGGCTGGCAAGACTATACGATCATGGAAGCAATCCTCAAACAACTCATATAGTTGGAACTCTTGGTTACTTGGCACCTGAACTAAGCAGGACAGGCAAAGCTACCACACAGACAGATGCATACGCTTTTGGCGCGTTCTTACTTGAAGTAGCATGTGGTAAGAGGCCAATGGACATGAGAGGGATGAATTTGGTGGATTTGGTAATGGGATGTTGGAAAAGAGGGGATATTATGGAAGCTAGGGATTTGAGTTTGGGAAATGAGTATGATGAGAAGGAAATGGAGCTGGTACTGAGATTAGGGTTGTTTTGTTCACATCCCGATCCTTCCGCTAGGCCTAGCATGAGGCAAGTTGTGCAGTTCTTAGGAGGTGATGCTGTGTTGGATAGTGTGTCTTTTGATTTTGACAGTGCTCCCAGTAGAGCTTATGATCAGTCTTTTGATGATTTCATTGCTTCCATGGAATATGCATCTTCCTCGTGCAATACCACCTTTGCTGCAAATTCTTCTTCACAGTTTAGTACTAAATGA

Protein

Gene

>AfisC3G04457
AATCACATTAACATATGAAGAGAAAATTTACTGTTCTTTTTCTTATTGGTTCATGTTTCCTCTTATTGGGGACTTACAGCTGTCTGTATTTATTGAGATATAGCTCACAGTTTAAAGTCTATTTTGGTGAAGATGAAGTTGACAACTGGATAAAAGTTTGAAAAGAACTTAAAAGATAAACATATGGTTAAAGTTTCTACAAAGAAAAAAAAAATCACTTCAGTCATGTTACTGAATTTTGTAATATCTATCCTCCTCCTAAAACTTGCTTCATCTTCTAACACTACTAATTTCATCTTCAACAAATTTAACCCCACTGACTTGACTCTGTATGGATTATCAGAGATTACAGACAGTGGCCTTCTCCAGCTCACAAACAACACAATTCTTCAATCCGGCCTTGCGTTTTATCCACACCCTATTCAATTCAAGCGCAAATCCTTTCATACAACCTTCATCTTTGCAATAGTACCGGAATACCCTAATATAAGTAACCATGGCATGACCTTTCTAATCTCCTCAACTAAAGAGATTACGGGTACACCTGGTCCTTTCTTCGGAATCTTCAATGAGACGAATAAATTCAACTCGAGTAACCTGTTAGCAATTGAGATGGATACCAGCATGACCATAGGATTCAAAGACATAGATAACAATCATATTGGAATTGATGTCAACAGCATTAGATCGGTGAATTCTTCATCAGCTGCTTATATTGATGCTAACAAGGAGTACAAGAGTATGAATCTTCCAAGTGGAGATTCTATGCAAGTTTGGATAGACTGCAGTGGCACAAATATTGAAGTTAGAATATCGCCTATTGGTGCTTCTAGGCCAAACATAGCATTAGTGTCATCGCAACTTAATCTTTCTTCTGTACTTTTGGACGAAATGTATGTAGGGTTTTCGGCATCTACAGGAGACGTTACAGCTTTTCATTATGTTCAGGAATGGAGTTTCAGTTTGAATGATGATGCTGAAGCTCTTGACATCGAACATATTCAACCTATTCCTCGTCAATTTAACACAGAAAAGCATTTGCAACCTATAACCGTTGCATTGCCGTTCGTTGGAGTGATTATTTTGCTCGTTTTACTGTTTGTTGCTTATTTTATTATCAAAAGAAAAAGGAAATTCTCTGAGTTATTAGAGGACTGGGAAATTGAATATGGACCTCATAGGTTCACATACAAAGATCTTTTCAAAGCTACAAAAGGCTTTCATGAAGATAATCTTCTCGGGGTAGGAGGATTTGGTAGAGTCTACAAAGGGGTGCTTCCAAAATCAAATCTTGAAATTGCCGTGAAGAAAATATCTCATGAATCACAACAAGGTAAAAATGACAGTATTTTCATTATCCTTTTTTTTCTTTTTCTCATAGCCAAGCGTAGGCTTGTAACCCACAATAGATACTCTATAAATCACAAAGGCTTATGCTTTGTTGATGACAGGAATGAAAGAATTTGTAGCAGAAATAGTGAGCATGGGGAGGTTGAGGCATAGAAATCTAGTACAACTTCTTGGCTACTGCCGAAGACAAGGAGAGCTCTTACTGGTATACGAGTTCATGCCCAATAGTAGTCTCGATAAATTCTTATTTGGTGACAAAAAGGCAACACTGAACTGGAAGCAAAGGTTTCAAATAATAAAAGGAGTAGCATCAGGACTTCTATATTTACACGACGGGTGGGAGCAAGTGGTCATTCATAGAGACATAAAGGCAGCAAACGTTTTGCTAGATTACGAACTAAATGGAAAACTAGGTGATTTTGGGCTGGCAAGACTATACGATCATGGAAGCAATCCTCAAACAACTCATATAGTTGGAACTCTTGGTTACTTGGCACCTGAACTAAGCAGGACAGGCAAAGCTACCACACAGACAGATGCATACGCTTTTGGTGCATTTTTACTTTTTACTTCAAGTTCATCAACATCATCGTCATCTTTCCTACCTTTTTTTCCAAAGTATTATTATGGGGATAAAGAATTTTCATATCCTGTCTGAGTTCCTATTTTAAGTTATATTTAGTTAAGTTTGTTATTTCTTTATTATTTTTTAATTCAGAAAAAAGTAGGAGTGTTTACTATGTATACTGTCTATAGCAACAACCTAAACTAAACTAGATATCCTAGCATTGAACCGATGATCGCTGGTAGTATCTTTCATCCCCTGTGAGTTCTGTACATTTTAAGTTTTCATTCTCTATAATGAATTCTCATCCTCTGCAAATTTCTAATTTGAATGTGTACAGCTAGAAGCATTCGAGTTTGCACTTCCTACTAATATGATGAAGTACCAGGTAGTGCAAAACCTGGTGCCTTTAGCTCCATATGGTGGTGTGGTGCTACGGGCACCCAGTTTTGCACTTCTTGGTACCACATCATGCTAGCAGGAAGTGCAGACTTGGAAGGTTTTAGTACTACACATTATATTATTATGTTTAAAACTTTTTTGCCTTGAAAATTTTAGTGTACAGTTTTTTCCCTGAATGTATACATTTGTCTTTTATTCTGCAGGCGCGTTCTTACTTGAAGTAGCATGTGGTAAGAGGCCAATGGACATGAGAGGGATGAATTTGGTGGATTTGGTAATGGGATGTTGGAAAAGAGGGGATATTATGGAAGCTAGGGATTTGAGTTTGGGAAATGAGTATGATGAGAAGGAAATGGAGCTGGTACTGAGATTAGGGTTGTTTTGTTCACATCCCGATCCTTCCGCTAGGCCTAGCATGAGGCAAGTTGTGCAGTTCTTAGGAGGTGATGCTGTGTTGGATAGTGTGTCTTTTGATTTTGACAGTGCTCCCAGTAGAGCTTATGATCAGTCTTTTGATGATTTCATTGCTTCCATGGAATATGCATCTTCCTCGTGCAATACCACCTTTGCTGCAAATTCTTCTTCACAGTTTAGTACTAAATGAACTTGGTGCAGTTATTCATCAATAGACAGATCTGACATGTGTTATTTTATTAGATACATAATCCCATGTGTGTGATTTTGTCATCATGAATGAAAGTTCTTCATCTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244130.1	2.7e-234	L-type lectin-domain containing receptor kinase IV.1-like isoform X2
Swissprot	O80939.1	1.3e-188	Lectin Receptor Kinase 1
trEMBL	A0A6J0PDB4	2.3e-211	L-type lectin-domain containing receptor kinase IV.1 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G37710.1	53.77	0.0	663	LecRK-IV.1;RLK	receptor lectin kinase

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04457	AT2G37710.1	610	264	8	30	622	20	628	53.77	0.0	663
AfisC3G04457	AT3G53810.1	613	276	8	28	622	18	629	51.88	0.0	655
AfisC3G04457	AT4G02420.1	628	276	9	19	622	10	631	51.27	2e-180	629

Ortholog group

Species	Genes
Allium cepa	g530150.t1
Allium fistulosum	AfisC3G04457
Allium sativum	Asa0G03524.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00139.16	Lectin_legB	Domain	35	272	207.1	2.7e-61
PF00069.22	Pkinase	Domain	346	610	163.2	6.9e-48

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0002229	P	defense response to oomycetes
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005739	C	mitochondrion
GO:0005576	C	extracellular region
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0009555	P	pollen development
GO:0009751	P	response to salicylic acid
GO:0046777	P	protein autophosphorylation
GO:0071369	P	cellular response to ethylene stimulus
GO:0071472	P	cellular response to salt stress

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network