result

Gene information

Detail information of AfisC3G04661

Location

Gene	Chr	Start	End	Strand
AfisC3G04661	chr3	835676543	835680181	-

Sequences

CDS

Protein

Gene

>AfisC3G04661
TTATATCAGTACAATAAATATCCGACGGATTTTTAGAAGATGAGCATGAAATCGAATCTCTCCGTTCAAATCCAGTTCCCGAACGACTGCTACGAGAGCAACGTGGGCGAACTGTTGGAGGAGCTGGACGATGGATATGACTTGGGGAACGATCTGTACAGTGGAGATGAGTTCAGGATGTACGAGTTCAAGGTGAGGAGGTGCACCAGAGCCCGGAGCCATGACTGGACCGACTGCCCGTTTGCTCATCCCGGGGAGAAAGCACGGAGGAGGGACCCTAGGAAGTATCAGTACTCGGCCAGTATTTGCCCTGATTATAAAAGTAGGGGTGGGAGCTGTCCTAGAGGCGATGCTTGTGAGTTCGCTCATGGCGTTTTTGAGTGCTGGCTTCATCCTGCCAGGTATTGATCTTTTTTCTATTAAATCATTAAGTATAGATCAGATTAGTCTTGATAATTTCTTTTTTACTAATTAATTAGTATATAGTATGTTCATTGGTTAGAAGAACATACATGTTTTTTTATGGAGATAAGATAACCTTATGCATAATTGATGTCTTACCTAATTTCTGCCTTTTTCTGTAATTAATTTTCAAAATTTATTATACTATCATATTCATCCACTAGTTACTGTAATCAGATATTAATTTTAAGATAATTTTTTATCATGGATAATTATGCATGGAGAATTATATTTTTACCCTATTATATTATTTCATTTTATTTTTAAAAATAATTACAGTCTTTTCCGCTGTAATTTATTTTTGACTTGTACTGGTTAAAGAACAACTAAATATTTGAAAATTTTGATTCAACAGTCCAAAATCCGAATCAACTAAGAAAATATGTGAGACCATAAATTGTGATTTGGGTAGTTCAATGAAAATCAGATAGTCATAATAATAAAAATAAATAATTTGTTTTGGTTCATCGATCCATGCATTGTTCATTGTTCACATATGAGGATTAACTTGCAAAGTTTGCCGATCATGAAATTACCACAAATTGCAGTACACCACATATGTTCATTCACACGTTTATTTCTGCAAGACACGCCATTAGCTTGTGATACCTATTGTCGGTGACATTTCTAAGTGCATGTGATGGGGTTTTTGACTGTAGTACACCAATTTTTTTTTTTTTTTCTTTTAACATGGTTTTGTTAACTTGGTGTTATCTTTCAAATTACTTTTTATAAAGGATGCCCCGTGTCTTTGAGTTGTTTTTATTTTGCTTGTTTTTTTCTTTCTACTGGCTTTTTCTAGGAAGGTATATGTGCTTCATGTACTTCGCCTTTTGCTGTGAGCCTCCGGACGAAGGCTTTTTCCTCCTTTTTGTTATTTATATATTCTTTTTATAAATAAAAAAAATACTTTTTATAAAGGACTTAAAATAACTCTCTTTAGTCCAGTTCTAACAGAATACACCTTATATGCAGATGGGATTTGTGTGTGAAATATATTGCACATTATTCTAGTTGAAAATTTGGAAAGAAAATAAAATAAAATTTAAGATTAGGTCCCTGATATTATTAATAATGTAGAACTAATTCTCCTCCAGAATAAAAATATATAACAAACACCAAATCTTTAGACCCATGATCTTAAGTTTCCCACTAAAATTTTCAAAAAATTGCATTTTAAAATCAAATAAATTATAGAAAACAGCAAAAAATAACCACATGTGGAAACCTTTAAAAAGCAATCACAGTTCTTGAAGATGAAAACTGCATGTGATTTGGATTATTGGAAATTGCTAATTATATGCAATTGCAAAAATTTGGAGTATAGATTGACCCTACCATCTCTATTAAAAAAGAAAAAACGAAATGTAAACTCTTTTGTCAAAGAAAATGCAGATGAAATTCAATTGAGAAGATTTTAATAGAACATTTTTCAATAAAAAACTTGCAAAACAAAAAGGTTACAGAATCTTTATATGAAGTTTAACATTTACACATTTCAAATTTCAAAAAAAAAAAAAAGGAAAAAAAGGAAAGCAGCATTTAAAAGTGCAGAATGTCCGCAGTAATTTACTTCTTGCACATATCGAAAATTTGAAATGGAAAGAAAAAACATATTCAAAAAATGTAGATGCGTATGGATGCTACGCATTTCATTGAAACATATATAAAAAAAAAGATAAAAAAAATTACTGGAACTTATTTGTAAAACTTAGAATATAACTGAAGTTACATAATATACCTACAAATATATAAATGAAAAATAAAATTCGTATGTACATAAAATAATATCTAAGTTCAAAATATATGTAGTTGCATAATCTATATATTAAAATATAGTAGTGCGAAAAAAAAATCGTTTCTGGAAAATGCCTATGTTATGTTTTCCCGGAAAGTACCAAGGAAAATAAAATCAAAATCAAAGTGCAGTATATATGTAGTTGCAAAATTAATTGTTTAAAGAAATACAAACATTTTTCATGCAAAATGATGAAAATTTTGCACATTTTTAAATGGTAAAACATTTTTCATTTATTGAAAATCTAAAAATTATCTAAACATAAAAATCACTTATTTACACATGTCACAATTAATCAAGTAATTAATTAATTAATTAATTTGAAAAGGAAACTGTAAAGCTTATGCATTTTCTGTACAATGATGACATTTATAACATTTTACTGTAATTATATGTAGGATGACAAAATGGTAAACTGCTAAAAAAACGACATACTAAATTCGTAAATTGCAAAAGAAAAAAAAATGAAAATCTGGGCTGGTCTTAGGTTAAGACGAGTGAGCCTACATCCAAAATGACAACCTCTCCTTATTCGAAAATATTGAAAAAGATCACGATCAAGTAATTAGTAGTTATAATTTTGCATTTTAATATAATTGAAAACTTTTTACATTCATTTTATTATCGCCTCTTATACTTAAAGTATAATTACACTTCAAGTATATTTATTATTTTCTTAAACCAAAGAGAGTGTGAATTTGCGCTTCGGCGCTTCGTTTGAGGGAAAACCAAATGATAGAACCGGTCCTGACTAGTCTCATGACATTTTGTTACGAGTCCATATGCAATGAATGATTTATGTACCTTAAACTATGTAAATGATAAAAATATATTCTTTGCAGGTATCGCACAACGCCATGCAGAGACGGAAAAAGCTGCAGGCGAAAAGTCTGCTTCTTTGCGCACACACGGCGCCAACTAAGGCTCCTACCACAAAGTGCAACTTCAAATTCACCGTTGTCTCCCACAATGTACTTATCACCAACTTCAGTATTATTTGGATTCAACCTCTCCCCACCTCCTCTTTCCAAGAGCAGAAAAGCCAAGTACGACCAAATGTTTGAAAACATCCTTAGTCGGTTCGAGGGCATGGAGATGTCTCCCAAAAGAATGATCCATGACAATGAACCGGGTCTCGAATGGATTGAAGAGCTACTGCAGGAAGAAGTTTAGTTCATCTTTCATCTCATAAGTATAAACTGAAAGTGTATAGAAATTAAGTTTCATTAGCAATAAGTCTATATATATGTTCTATGTATTGCTTTGATTATTGAGATTTTATTTGTTTTCATCAGGAGGAAACCAAAACCTCTAGGAATTTGTATTTAGGTGAGTATTTGGGTATTATTGTTTTTTTCTTTGTTAAGGTTGAATTTTTA

Functional annotation

Database	accession number	e-value	annotation
nr	THU75050.1	1.5e-56	hypothetical protein C4D60_Mb04t39820
Swissprot	Q9ZWA1.1	3.7e-55	Tandem CCCH Zinc Finger protein 4
trEMBL	A0A444BXC2	1.1e-56	C3H1-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G03790.1	64.05	5e-54	207	AtTZF4;SOM;TZF4	Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04661	AT1G03790.1	153	43	3	36	178	74	224	64.05	5e-54	207
AfisC3G04661	AT2G25900.2	136	44	1	37	172	83	216	66.18	2e-52	202
AfisC3G04661	AT2G25900.1	136	44	1	37	172	83	216	66.18	2e-52	202

Ortholog group

Species	Genes
Allium cepa	g341123.t1; g518521.t1
Allium fistulosum	AfisC3G04661
Allium sativum	Asa2G03858.1
Arabidopsis thaliana	AT5G07500.1
Oryza sativa	LOC_Os05g45020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	88	111	30.4	2.4e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network