result

Gene information

Detail information of AfisC3G04684

Location

Gene	Chr	Start	End	Strand
AfisC3G04684	chr3	839316234	839319592	-

Sequences

CDS

>AfisC3G04684
ATGCCAATGAAGTTCTTAAGTTATGCTGAGATCAATCTATACAATTCTGATAATGAGAAATCAGTCATAAACAGCGAGTTCAGCTGTAACAATATCCCTCTATCATCTACAGTTACAGCAAGCACCAAGAGACATACCGTTCAGAAACAGGAGAGTTCAAAAGGCACTTGCAAGAAGCCGAAGAAAGGACCATCTTCTTCTTCCATGGGGACGATCATGATTCGAAAGCAGAAACTAGGTGATAGAATCGCAACGTTGCAACAGCTAGTTTCACCTTTTGGGAAGTCAGATACAGCTTCAGTGTTACAGGAAACATTAGAATATATTCGGTTCTTGCAAGACCAAATTCAGTATGCGTCTAAGAGGAAAGATGGATCAGGAAACAACGATCTAAGGTTACGAGGGTTGTGTATTGTACCAGTATCATGCATCAAAGAAGTTGAAAGTGAAGATGATGTTGCTGCTTATTCATGTCGATATTGGTACAATACACAACCCTCGTTGACCAGTTACATGGGCCAGTTTGCATCAGAAGAATACATCTACATGTCGATATTGGACAGAATCTTAACACGGATACAAAGCTTCCCACAGTCTAGTTTTAAAAAAATCGAATTGCAGTTGATCACAATAATGATTTGCCAATACCTTTGGCCCTTGGACTGTCCCATGAGTCGAATACTGCTGTCACTGTTAAGAATAGAGCCCTGGACTTTTGAGCAACATCTTGGCGAAGCAGTTTTTATTCCAGTAGGATGCCCTCATCAAGTAACAAATAGAAAGTCTTGCATTAGAGTAGCCATGGACTTTGTTTCTCCTGAGAGTCTCATTCAATGTGTCAGTTTAACTGAAGAGTTTCGACTGCTTCCAAAAACTCATAGGTCAAAGGAAGACAAATTAGAGGTAAAGAAAATGTCTGTATATTCCATGCAAGAAGCTGTGAAAGAAGCTAAAAAATTGATATCCTCTATCAGGTCAGGCTGGTGTATTTACAAGTTACTGAACAATGCTTCTGTCAAATAG

Protein

Gene

>AfisC3G04684
ATGCCAATGAAGTTCTTAAGTTATGCTGAGATCAATCTATACAATTCTGATAATGAGAAATCAGTCATAAACAGCGAGTTCAGCTGTAACAATATCCCTCTATCATCTACAGTTACAGCAAGCACCAAGAGACATACCGTTCAGGTACACATAATTAATAATAAAAATAATAATTCTTTCTTCTTATAATCAATTTGTCAGCTTTTGTGTTATCCAGAAACAGGAGAGTTCAAAAGGCACTTGCAAGAAGCCGAAGAAAGGACCATCTTCTTCTTCCATGGGGACGATCATGGTACAAATGAGAAGCTGTTGAAATTTGCTTATTTTTCCTGCTTTTAATTACTTTTTTAATCTGAAGTTTAACGATGATAATTAATAGATTCGAAAGCAGAAACTAGGTGATAGAATCGCAACGTTGCAACAGCTAGTTTCACCTTTTGGGAAGGTCTCGTTCTTCGTTTTTCCAAATTGTCAAACATTTGATAATCATATTTCTGTGATAATTTAGACGGTGGATTTACTTAGAATGCATTGTATTTGCAGTCAGATACAGCTTCAGTGTTACAGGAAACATTAGAATATATTCGGTTCTTGCAAGACCAAATTCAGGTATCAATCAATGTGTACAATGATCTACTTACTTTAACATGTTCGTTTTTATATCGTAAATATTTGACTATAACACTATGCTTTTGGATGAATTACAGTATGCGTCTAAGAGGAAAGATGGATCAGGAAACAACGATCTAAGGTTACGAGGGTTGTGTATTGTACCAGTATCATGCATCAAAGAAGTTGAAAGTGAAGATGATGTTGCTGCTTATTCATGTCGATATTGGTACAATACACAACCCTCGTTGACCAGTTACATGGGCCAGTTTGCATCAGAAGAATACATCTACATGTCGATATTGGACAGAATCTTAACACGGATACAAAGCTTCCCACAGGTAAAAAAATAATAGCTTTTCCATCATGTGAGAAAATTGAAGGGCTTTCACCAAGTTTTGAATCGGCTAAGCTCGGAAACTTTCACATGATGATAAATTCGATTTTAAGCCACGTCAAAAATTATAAAGCTTCGGCAGAACGTAAAATCATTCTAGTGCTTCCGTAAATTCTGTTAATTTCATGCTTCGTTATCAGCATCTTAAGTTCTTGTAACGTACTCGTAGTGCAAACATCAAATTCTTGGTTCACATATTCTTACTCAGTTTATAGACATCATTTGCGAACGTTTCCTATCGTGAAGTTTAAAATCAAAAGACCTCAGCAGCAGTGACCAAGACCAGTATCGACGAAATATCATGTTCAAAGTGTCCCGTTTAAAAGACCGAAAATACATACTCACACATCACAGTACATAATTTAACAGATATATACACAAAGCATCCTCCGCATATATAACCGAAAATCTCCTGACCAAACTAAAACCCAATTTAAAGTTCACCTTCCTTCCTATTTGGATATAAAAGACTTACAATTGAGGTTAGCTTGTTTTTTCCCTTCCCTTTTTTGTCTTTCTTTCATGATGTTCATCCTAATACGGTTTTGATCATGAATATTATCTCCTGATTATATGTTTTACTTGCACATAACCTGCACTTTTGGATCATGAAAATTTGGGGAGGAAATGCACCATCATATCTTTATAATGGCTTTCCAGAATGCTGTAATTCTCCACAAGTTCTGCATATGCTTCTGGCATTATTTGTTTCATTGTTTCAATATCCTCTGGTGTCTTGATTCCAACAACTACATCTTCACCCTGTTTAATTGGAACTTGTTTTTAGTAATATAATTAGACTGTTATTATAGTCTAGTTTTAAAAAAATCGAATTGCAGTTGATCACAATAATGATTTGCCAATACCTTTGGGTATTTCTTTACCTGGGCATTTATCAGGAATTCACCATACAATTTTCTTTCTCCTGCACTTGGATTTCTTGTGAAAAGAACACATGAACTTTCTCCCATGTTCCCAAACACCATGCATTGAATATTCACCGTAGTCCCTTCCAAACTTGTAATTTTATTTATGCTTCTGTACTTTTATAGCCCTTGGACTGTCCCATGAGTCGAATACTGCTGTCACTGTTAAGTACAACTGCCTTTTTGGGTCTGCCATAAACAGGGATTTATATTTAATGGTGCTTAACAAAGAAGTGAAGGAGAAAATACAAGAAGCAGTGAACTCGAACAAACTGAAAAGCAAAGCAGGAATATGGTAAGTTGTCTACTTGTTGTAATCATCAACATTTTTTTAAATAGGAAGTCTTGATTTATTCCCCTTTTTAGTATTGCATGTCTTAACATTTCTTTTGCTCCTCTCTTATTAATTATCAGGAATAGAGCCCTGGACTTTTGAGCAACATCTTGGCGAAGCAGTTTTTATTCCAGTAGGATGCCCTCATCAAGTAACAAATAGAAAGGTTAGTGTTCTCTATACTCTATTATTGATTGATATAGAGGATTTTAGCAACGGTGTAATGAATTCATATTTTTGTTATTTTTTTATCATAATTATACATCAGATTATTTTGCTTTTTATTTAAGATGGTACATTTATTGATTTTCTTAGATATTATAGGATGTTTATACTGTACTTTATATAAATAATTTGATCTATTTGTCTCAACTGATGATTTTCACCCTTGATAAATTTGAGAGACTTACTAGAGAAAAACTAGATAGTCTCAAACCAAAGAAAAATAACTAGAAACTAATTTCATTTAATCCTAGAAAAATGTCACTAAAAATATAAGTATAGTCATTATATATGTATTCAATTATACAATATTTTTCTCATTTTTCCTTTTGCGTGGTAGCGTGTGTGTGTGTAAAATCTCTGTGTGTGTGTATTCAGTTATGAGTCTAAACTTTTGTTATTGTAATTTTTCAGTCTTGCATTAGAGTAGCCATGGACTTTGTTTCTCCTGAGAGTCTCATTCAATGTGTCAGTTTAACTGAAGAGTTTCGACTGCTTCCAAAAACTCATAGGTCAAAGGAAGACAAATTAGAGGTACATATTGTTTTCAGTTAATGTATTTAGAAAAAAAAGAAAAGAAAATCATTTCTCGCTTAAGTTAGCAGCTTCATCTGCATTTCTCTCTGTGATCATGTATACTTATGAACTAAAGAACTTATTATTTTTCTTGGTTTATAACTCTATGCCCGGATTAGTTAGCTTCACATGATGTAGAAACTGACCTGACAGCTGTTCCATATTTTGTATGCAGGTAAAGAAAATGTCTGTATATTCCATGCAAGAAGCTGTGAAAGAAGCTAAAAAATTGATATCCTCTATCAGGTCAGGCTGGTGTATTTACAAGTTACTGAACAATGCTTCTGTCAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK69164.1	3.6e-33	uncharacterized protein A4U43_C05F20010
Swissprot	Q9SSE9.1	2.2e-24	Protein JUMONJI 25
trEMBL	A0A5P1ETN3	2.6e-33	JmjC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00990.1	66.30	2e-33	139		Transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04684	AT4G00990.1	92	31	234	325	745	836	66.30	2e-33	139
AfisC3G04684	AT1G11950.1	96	38	226	321	776	871	60.42	3e-31	132
AfisC3G04684	AT3G07610.1	83	32	234	316	807	889	61.45	1e-26	117

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02373.19	JmjC	Domain	223	270	41.0	1.9e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000785	C	chromatin
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0055114	P	oxidation-reduction process
GO:0008168	F	methyltransferase activity
GO:0009555	P	pollen development
GO:0009739	P	response to gibberellin
GO:0009908	P	flower development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031490	F	chromatin DNA binding
GO:0032454	F	histone demethylase activity (H3-K9 specific)
GO:0032776	P	DNA methylation on cytosine
GO:0033169	P	histone H3-K9 demethylation
GO:0042631	P	cellular response to water deprivation
GO:0048366	P	leaf development
GO:0051213	F	dioxygenase activity
GO:0060969	P	negative regulation of gene silencing
GO:0070919	P	production of siRNA involved in chromatin silencing by small RNA
GO:0071215	P	cellular response to abscisic acid stimulus
GO:0071472	P	cellular response to salt stress
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0080188	P	RNA-directed DNA methylation
GO:2000214	P	regulation of proline metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network