result

Gene information

Detail information of AfisC3G04686

Location

Gene	Chr	Start	End	Strand
AfisC3G04686	chr3	839531626	839534714	+

Sequences

CDS

Protein

Gene

>AfisC3G04686
ATGCTTCGGCCCGTCGTATGTTCCAAGGCATGCGAGATTTTCATACTGGAACTGACGCTGAGGGCGTGGATTAACACGGAGGAGAATAAGAGGTGGACGCTGCAGAAGAACGACATAGCGTCCGCGGTTGCGAGGACGGACACGGACATCTTCGATTTTCTGGTGGATATCGTGCCGAGGGAGGATCTGGTAAGCGAAGATGGGCTCGGGGTGGTGGGCCTGGGGTTGGTGGGCAATACTTTTATATGCCTTGGTCGGAGTTCCGTTTGCCAGCTCAGCAGGGTTCGATGTCCGATGATGGTTAAAATTTCGGTTGTCTTTTTTTTCCTTTCTCTGTATTTGTCGTGGATGACATTTTACTGTTGCGTTTTGTTTGCATGTTTGAAGTGAAGGTTTGGTTGGATGATGTCACATTGAAGGCATGAGGACAGTAGTAAGCCTTTCTTTATGTCTATTGTTTTGAACCAGCAATGTGCTTTTGTTACCTGCAATTAATAATGTGAATGACAGTTTAAGAATTCCTTTTGCTGGTATTGGGTTCAAATTTTTGGCAGAATAAAATGAACATTTTTATTAACAGAAGAGGTGTTTGAGTCTACACTTGCTGGCTAGAAGTTTACTATGTTAAGGGTAAGATTTTAACTGTTAAGGATGGATACAATTAACTGGATAATAACACATTACTTTTTGGTTTATACAAAAAATTGTTTATTTTGTTGAGTAGATCTTAATATATGTACCACACCATCAAATTTTATTGGCTATGTCAATATATATGTATGAACATGGAAACATATAGCGAGCGAGAAGTCAAGTATGAAGAATCAATTGGTTTCCCATAATTACATTAAATGTGAAAGACGAGGCACCGATGTTAAAAACCACAGGTGCCAATGTACCTGACTATTCATCTTTCATATTTAACATGTAAAACCAAGCCTATATGCTCCTTCATACTTAATTCTCGATTTTTTCTCCCTCCGTGTGTGCTTTTTTTTTTGCGATTACTGTCAAAAGCAACAACCCGTCTTTCGTGCCCTTTTGATTCTACACACATATTTTATTGATTGTAGTTACATTTGTGTTCACAGCCTTGAACATTGAATTGGTATATACATACTTGAATCATAAGCATCTCTTGTCAAAGACGCATCGAGAAAAAGATATCAATACGCTAAACAATGTATTACTCATTACCGTTGGAAATACCAAAAAATTACGTGCTTGAGTTTGTTTGAAGCAATCATGAAACGACTTAGCGAGAGTCTTATATGGGTTAGTACAACTAAGTTAAAATAAAAGATCTCATGTTAATGACGTACAATAGTCTTCCAACTTAAGGGTACTGTTGATTTGAAGTACTTTGATTACGGTCAAGCACACGACAAAGCGATCATATTACGACCATAGTAGGGTATACGTTGAACTTTGAATTGACCCACTATTGAAAAGATGATTCGTCTTCTTCATTGTAGAAGGTTAGTTTTATCGCAATTAGTAGTCAATGTAAAATCAAACTCTCTGGTCGAAATCGATATGTGTTATCGGGTTGAACTAAAGACTTTACTGTAATCTACGCAATTAACTACATATATTTATAAAGTTTTAGACTATACACCAAACTCTAGCCATCTTACAAATACAGTGATGACAAAATCAAAACATGCATAAAATATCGTTATTAGGTGCAACTTAATAAAGATTAGAATTAGATTTTACCTAAATGATCTAAGAGATTGAACTTGCGTCTGATGCTGTACTTTAGCAAATTTTGTATAAGCATCAGTATTTAGATTGTTTAAATATTGACCGAGGATCGAGTACACATCAGAGAGTCAACACATCCGTGTTGTTGTTAATATATGAGTTCGACCAATTTGAAATCAATTTATAGTGTTACAAATTGATAGTAAAATTAATACATATATATGCTGTGTTAAATTTCTAAAGCCTAAACAATTAATTATAACAAATGTATAGAAATTATAGGTCAATTTAGTTAAAGAACGTTCTCAAATAAATTAATTAAACAATTGATTTAATTGTTAAATCAATTGGACCCGAAGTTTGAAAGCCAAAACACAAGAGGTAGGGGGTTGGATATAGCATAGAGTTGAGGGTGGAGACTTAGTCTTCAGATCCATAGAGAAGAGGTTAGATATTTTATGATCTAATTGGCTATAAATAGCAACGTCATTCACTCTCTTTTACACTAAAAAAAGCCCTTACCCTAGCTTCCACTACTGAACATGGATGATGTCGTATATGGATCGCGTGGTCAAGTGGAAAGAACTAGGAAGTTTGAAGATGGAAACAACTAGCTATCCAGATGTTCGAGGGATCAAAAAAAGGTAGTCATTTTTAATCATTTCACTTGTGTGTATGCATGTGTGTGTGTGTGTATATGTGTGTGTGTGTGTATATATATATATATATATATATGCGCTATTATTATATGTACTATGATGGCCAGTTATTGCTGGGTCTTTTTTATTTGATCGTACTCTGTAATTTATATAATAACAATAAAAGGAACACATTTTCAATACATACATACATACATATATGTATATAATAAGCTTACTCTCCAATTTATATATTCAGCCAAAATAAAACTAAAAAATGAAATAAAATGTATATTAAATAACATATACATATATACAATATATACACGCTGTTTTATTCAAATTAATAACTAAAAAACGATATTTCTTTTTCTTCCCTTAGTATGGAAAAAAAATTGTGTGTGAATTTCTAATTTAAAGCATATTCTACTTTTAAATTATATTAAAAAAATTGGCGTTTTTAAAATAAAATATATTATATGTACATAGACATACACAGATACATATGTATGCAAATATGTGTAGATTTCGAATTTAAAACATATTTGGTTTTAGAATTATATTAAAAAAATCGTCAATGGCTTTCTTGTGTTTGGAAAAAAAAAATTAACTAAAAAATTTAATTTTATGTAGGTTGTCCTTTTTTTTCCTTCTGTATTTGTCGACGATGCCATTTTACTGTTCTGTTTTGTTTGCATGTTTGAAGTGAAAGTCTGGTTGGATGATGTCATAGTGAAGGCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256643.1	5.2e-17	nuclear transcription factor Y subunit C-2-like
Swissprot	Q8LCG7.2	5.4e-19	Transcriptional activator HAP5B
trEMBL	A0A5P1F9J1	3.7e-17	Histone domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08970.1	80.00	1e-21	98.2	HAP5C;NF-YC9	nuclear factor Y, subunit C9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04686	AT1G54830.3	60	10	1	4	63	94	151	80.00	9e-22	98.2
AfisC3G04686	AT1G54830.1	60	10	1	4	63	94	151	80.00	9e-22	98.2
AfisC3G04686	AT1G54830.2	60	10	1	4	63	94	151	80.00	9e-22	98.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	5	43	30.2	3.7e-07

Gene Ontology

Accession	Ontology	Name
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003713	F	transcription coactivator activity
GO:0006457	P	protein folding
GO:0005829	C	cytosol
GO:0005654	C	nucleoplasm
GO:0008134	F	transcription factor binding
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0016602	C	CCAAT-binding factor complex
GO:0032993	C	protein-DNA complex
GO:0043457	P	regulation of cellular respiration
GO:0046982	F	protein heterodimerization activity
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0051247	P	positive regulation of protein metabolic process
GO:2000905	P	negative regulation of starch metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08066	NFYC, HAP5; nuclear transcription factor Y, gamma	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network