result

Gene information

Detail information of AfisC3G04702

Location

Gene	Chr	Start	End	Strand
AfisC3G04702	chr3	841577619	841579622	-

Sequences

CDS

>AfisC3G04702
ATGTTTTCGTTCAAAGTGAGGCCTTGTTCTAGGGCTTACTCTCATGACTGGACAGAGTGCCCATTCGTTCATCCAGGCGAAAATGCACGGAGAAGAGATCCTAGAAAGTTTCATTACAGCTGTGTCCCATGTCCAGATTTCAGGAAAGGCGCTTGTCGCAGAGGCGATTTGTGCGAATACGCTCATGGAGTGTTCGAGTGTTGGTTGCATCCAGCACAGTATAGGACTAGGCTGTGCAAAGATGGAGTTAGTTGTTCTAGAAGAATCTGTTTCTTTGCTCATACCAATGATGAGTTGAGGCCTCTTTTTGTCAGTACAGGATCTGCTATCCCATCTCCTAGATCCATGGACATGTTTCGGAATCCATTTGCTTCTCCTTCTGGATTGAATTCTAGTAACCCATGGCCTCCGCAAAACGTGCCTACTTTGCACTTGCCTAGCAATGGTAGTAGCAATGCATTGCAATCCAGTAGGCTTAGGGCTTCTATGTTGAATGACATGTGTTTCTCTCCTAGCCGTGGGAGTAGATTGAGCTCGATTGTAGGAGGAAGGTCATTAAATCCTTCAAATCTCGATGACGTGTTCAGTGCAGAGAACCTGAACTTGTCTTCTCCGAGGTATGGGTTAGATCAAGGAAGTGTGTTTTCACCATCGCATTATAAATCAAACATGAATGTTGATACAAATCAACTGTTGCATGCATCACTTGGGATTTCATCTCCTAGTCGAATGTCCCCAAGAAGCTTCGAACAACAATCCCCTTTGAGCGCACGGCTCAATTCTTTAGCCCAACAAGAGAAGCTTCAACAGTTGAGAAACCTTGGTTCGCCCTTGAGTTCTTCATGGTCTAATTGGGGCTCGCCTAGTGGAAAACTAGACTGGGGAGTTAACGGAGAAGAGCTCGATATGATCAATCGATCCAAGGCTAGAAATGACGAGTCCGATGTTGCTTGGATGGTCAATCCGGTTGATTCGAAAGAGGACATTGCAGTTAATGGGGTTTATGAGGACAACAACGATGCAAATGTTCAGATTGAGGATCATGCAGTTCTTGGAGATTGGCTCGAAAATATGCAACTAGGTCCGTTTGTTGCTTCCTAA

Protein

Gene

>AfisC3G04702
CAAGTTATAACTTGTTTGATTGAAGCCGGCGCGGATCTAAATTTGGCGGATGCTAATGGATTGAAAGCAGTGGATGTTATCTTTGTTTCCCCTAAAATGACGGTTAGTGAAAAAACCGCTTTAGAAAATTTACTAGGAAACAGTTCGACTGAAAAGAATGGAAACTTACGGGTAGTGACTTCTATTAATGACAGCGTGGAGTGTGATGAGGAAGATCTAGATTTATTATCTTCCATAACTGGCGAGAGAAAAGAGTATCCAATAGATCCAACAATACCCGATATAAAGAATAGCATTTACGCATCAGATGAATTCAGAATGTTTTCGTTCAAAGTGAGGCCTTGTTCTAGGGCTTACTCTCATGACTGGACAGAGTGCCCATTCGTTCATCCAGGCGAAAATGCACGGAGAAGAGATCCTAGAAAGTTTCATTACAGCTGTGTCCCATGTCCAGATTTCAGGAAAGGCGCTTGTCGCAGAGGCGATTTGTGCGAATACGCTCATGGAGTGTTCGAGTGTTGGTTGCATCCAGCACAGTATAGGACTAGGCTGTGCAAAGATGGAGTTAGTTGTTCTAGAAGAATCTGTTTCTTTGCTCATACCAATGATGAGTTGAGGCCTCTTTTTGTCAGTACAGGATCTGCTATCCCATCTCCTAGATCCATGGACATGTTTCGGAATCCATTTGCTTCTCCTTCTGGATTGAATTCTAGTAACCCATGGCCTCCGCAAAACGTGCCTACTTTGCACTTGCCTAGCAATGGTAGTAGCAATGCATTGCAATCCAGTAGGCTTAGGGCTTCTATGTTGAATGACATGTGTTTCTCTCCTAGCCGTGGGAGTAGATTGAGCTCGATTGTAGGAGGAAGGTCATTAAATCCTTCAAATCTCGATGACGTGTTCAGTGCAGAGAACCTGAACTTGTCTTCTCCGAGGTATGGGTTAGATCAAGGAAGTGTGTTTTCACCATCGCATTATAAATCAAACATGAATGTTGATACAAATCAACTGTTGCATGCATCACTTGGGATTTCATCTCCTAGTCGAATGTCCCCAAGAAGCTTCGAACAACAATCCCCTTTGAGCGCACGGCTCAATTCTTTAGCCCAACAAGAGAAGCTTCAACAGTTGAGAAACCTTGGTTCGCCCTTGAGTTCTTCATGGTCTAATTGGGGCTCGCCTAGTGGAAAACTAGACTGGGGAGTTAACGGAGAAGAGCTCGATATGATCAATCGATCCAAGGCTAGAAATGACGAGTCCGATGTTGCTTGGATGGTCAATCCGGTTGATTCGAAAGAGGACATTGCAGTTAATGGGGTTTATGAGGACAACAACGATGCAAATGTTCAGATTGAGGATCATGCAGTTCTTGGAGATTGGCTCGAAAATATGCAACTAGGTCCGTTTGTTGCTTCCTAAATATATTCAAATTCAATTTTTATAACTTATTGATTACTAGCACAAGTACTACATTATATTTTTATGATTAGTAAATAATATATATATTTTTGGTTGTGGGAAATCAAAATTCAAGCTAGAGATTAAAATTTGTTGAAATGGGTTGAAGAAAAAGAAGTGATTTATTGTAGTGATATTATGGTTTATGTTTAAGGTCCATTTCGTTGATGTATGTTATAACATGTACAAGTGTTGGAAAATGCATTTTATTGTGTTTGTTATTTATGGTGGCTTGAGGTTCATGCATAGTCTTTATTATTGCTTGTCCTTTTTCTTCTTTTTTTTCTTTTGTGCGTATGTGTGCATTGTGTAGTTGTTTGAATATTGGAGAGCGGTATGGAGCAAACGTAGGGTTGGTTGATTATGATGCTACTTTTAAGAAAGCATGGGGAGTTCTTTGATAGCGTTGGTTGTGGGGATAGTGGTAGATTTCTATTGAATTCACAGTAGCTGAGCTTATATTTCTTCGATGAGGTGGATTCTTTAGTATAAAGTCATAAAGTGTGGTTGTAAAGTATATAGATACTTGTTCTACTCAATCACATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256697.1	7.1e-112	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	2.1e-105	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A8B7BVC8	1.3e-110	zinc finger CCCH domain-containing protein 24-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	45.24	1e-90	330	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04702	AT2G41900.1	462	144	16	1	365	264	713	45.24	1e-90	330
AfisC3G04702	AT5G12850.1	455	159	19	1	360	260	704	41.98	3e-80	295
AfisC3G04702	AT5G58620.1	351	151	10	1	309	212	551	41.88	2e-67	253

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	43	63	26.0	5.5e-06

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network