result

Gene information

Detail information of AfisC3G04818

Location

Gene	Chr	Start	End	Strand
AfisC3G04818	chr3	858347702	858352868	+

Sequences

CDS

>AfisC3G04818
ATGGACTCACAGAAAATTCTTAAATACGGAATAAACGGTCCAAAATCACCCAACGAACTTTCATCATCATCGAGTGCTCCTCCTCCACCCACATCGTGCTCCACCCGTACCATTAAATTTGATCTGGGCAATTCTCCAAGCTCTCCTCTCTCCCATTTCGAATCTGATTCTCTCTCTAAACACAGCAATAGCCAAGAAGCAATCTCAAATCATATCCCATCTCAACATTCCCCTTTAGAAATCAACAGTTTTCCATATGCAATTTCAAGTCAGAGAATGAGAAATGCTCTTCAAGAAATAGAGACTGTTCTCATGGCTCCAGAAGCTGCTGAAAAAGTCACTGCAGAAAAAAGGCAACAAAGTGATGAAACAGGCCGCCCTGAAAAAAGGCTGAAAGAAATGAAAGATTTAAAGCGCCTTCTAATTGAGTGCGCTGAAGCCCTATATGAAAACCGAATAGATGACTTCAAAGCCCTAATAGAAGAAACCCGAAACTACACATCTGTAAACGGAGACCCTATCCAGCGCCTCGGTGATTACATGCGCGAAGGCCTTGTGGCCCGTTATGAAAACTCAGGCACTAATATATATCGAGCTTTGAGATGTCGTCAGCCTGAAAGTAAAGAATTGATGTCCTACATGCGTAAGCTATATGATATCTGCCCTTATTTTAAGTTCGGGTACATGGCAGCGAATGGAGCAATTGCAGAGGCTTTGAGGAACGAGGAGAAGATACATATAATAGACTTTCAAGTAGCACAAGGAACACAGTGGATGACCCTTATACAAGCTTTGGCAGCTAGGCCGGGTGGGCCACCTCATGTCAGGATTACAGGCATAGACGATCCGGTCTCCGAATACGCCCGAGGATGCAACTTACAACTAGTCGGAATGACGCTAACCGAAATGTCGAACAAATTCAACATCCCTCTAGAATTCACCCCTCTACCAGTCTACGGCCCAGACGTAAAGCGCGAGATGCTCGACATCCGCCCCGACGAAGCCCTAGCCGTGAACTTCACCCTCCAACTCCACCACACCCCAGACGAAAGCGTCGACGTAAACAACCCCAGAGACGGCCTCCTACGAATGGTCAAAGGACTCTCCCCTAAAGTCACCACTTTGGTCGAGCAAGAATCGAACACCAACACCACCCCTTTCCTAACCCGGTTCGTCGAAACCCTAGACTACTACTCCGCCATGTTCGAGTCTGTCGATGCCACCTTGCCTAGGAACAGCAAAGAGAGGATTAGCGTTGAGCAGCATTGTTTGGCAAAGGACATTGTGAACATAATAGCGTGCGAAGGGAAGGAGAGGGTGGAGAGGCACGAGCTTTTGGGTAAGTGGAGGATGAGGTTTAATATGGCGGGTTTTAAACCGTACCCGTTAAGCTCGTATGTGAACTCTGTGATAAGGACGTTATTGGGGTATTACTCGAAGAATTATACACTGGTGGAGACGGATGGGGCGATGCTGCTTGGGTGGAGGGATAGGGATCTGATTTCTGCTTCGGCGTGGCAATGA

Protein

Gene

>AfisC3G04818
TTGGTCGTTAAAAGGGCGAAGAGTTATCGCTCTTCTGTATTTAGTTCTAAAATTGTGATTTGAGTCGAAATTAAGTAGAAATCGAAGGTGCTTTCTGGAAGTTGGTGGTTAATTTGACCTGGAGTAGAATTTGGTAAGGTTTCTTATGGTTGTAGTTTTAGTTTATCTTCTTCCTCGCGTTTTTTATTTTTTATTTTCTGTTTGCTTTTAGTCAGATAGGGCCTTAGCTTTTGTTTTTAGGGTTTTGTAGGCCGCTACTGATCAAGGGGTGAATGATCAAAATTAAGGAATTATATGCTTGTTTTCTACGGATTAGTTATAAAGTGAATTAAATTTACACGAAATTGATATTTCCAGCTTAATTCGTATGATGTGAAGCTTGGTTAGAATTTTAATTTTATGCTTTATAGTTTATAGTGTATACGGCGTTCACAATTTGATTCACAACGTTGATGGGTGCACGGTCTTCGTAAATGAACACAATGCTTTCATCTATTCACACTTATGCCATTTGAATGATGAAATATTGTTTAGTTTATTGAAAGCTTATGGAAACACTAGTGGAGCTGTGCAATAAAAACTACCATGGCTTCTAAGTTGAGCAAGGGAAAAAAAAGATTCTGCTATAATTGCCAATGGCATATTATAAACTATAGGGGTGATGGAACGCTTAATAGGAAATTTCATTTTAATTTAAAGGGATGATAAATGATTCGTGAATTTTGAATAGTGATAAGTTGCAACTGTTGAATTCTTGAATTTAATGTTAAAAATGGTGAATCAGGGATGGCTGCAAGAAGGGCTAACGCAGAAACAGTTATTTAGGAGTTCCTGAAGTGTATTAAGTTGTTTACCATGTAAGAGTGCTGAACTATTGGTGTGTAGGTATATGATGATGAATATAGTAGCTAGAAACTACCTTGGATTATAATTAGAGGGTTTCTTTTGGTTTATCTATTTACTTGTGCAGTTGGTTACAAATTCCAAAGCTGGTAACATATCTCTTTTCTAGAAAGAGCTAAAAAAACCATTCTTACCCTTTAACGCCATTAATTTGACCGCTTTTAAAAACGAATCCAAGTTTAATATGAGTTCTTTTAGTAGCAGAACAAATAAGTTGTGATTTTTAATGTGTAATTTGTTACTTATATTGTTGCACAGCCAAGTTTGGCAGTATTGTTGCAGAGCTGTATCTCACTCATCATCTTATCATAAATGTAGTTTTAACTTTTATATGCTTTTATTTTAGTTTGTTCGGTAAGGCAGATCCGCAGACACTTGGTACTTTGTATGATTTGCCACATCATTTATCTTTCGGCAATTGCTGTGCAAAAACCACATGAACGTGTTCTTAACTTGAAGCATGTTAGGTTACTTAAATCTTTGGTTATATTATAACGTCATATGCTTTTAATTTAGTTCATTAGGCCACTGCTAAACATATCTTCTCAGACACTTGGTTGTTTATACGATTTGCCACATCGTGTTATCACTTAGCTGTGCTAAAACCACATGAACCATCTAAATCTTTTGTTGACTATTAATTGTTTTTGTGTAAGATCAATATCTTACTTATATTGGTTGTTATTAATTCATTGTGGCAGATTCATCTTTCATCAAGAGCTCATGAGCAAAGCATGGACTCACAGAAAATTCTTAAATACGGAATAAACGGTCCAAAATCACCCAACGAACTTTCATCATCATCGAGTGCTCCTCCTCCACCCACATCGTGCTCCACCCGTACCATTAAATTTGATCTGGGCAATTCTCCAAGCTCTCCTCTCTCCCATTTCGAATCTGATTCTCTCTCTAAACACAGCAATAGCCAAGAAGCAATCTCAAATCATATCCCATCTCAACATTCCCCTTTAGAAATCAACAGTTTTCCATATGCAATTTCAAGTCAGAGAATGAGAAATGCTCTTCAAGAAATAGAGACTGTTCTCATGGCTCCAGAAGCTGCTGAAAAAGTCACTGCAGAAAAAAGGCAACAAAGTGATGAAACAGGCCGCCCTGAAAAAAGGCTGAAAGAAATGAAAGATTTAAAGCGCCTTCTAATTGAGTGCGCTGAAGCCCTATATGAAAACCGAATAGATGACTTCAAAGCCCTAATAGAAGAAACCCGAAACTACACATCTGTAAACGGAGACCCTATCCAGCGCCTCGGTGATTACATGCGCGAAGGCCTTGTGGCCCGTTATGAAAACTCAGGCACTAATATATATCGAGCTTTGAGATGTCGTCAGCCTGAAAGTAAAGAATTGATGTCCTACATGCGTAAGCTATATGATATCTGCCCTTATTTTAAGTTCGGGTACATGGCAGCGAATGGAGCAATTGCAGAGGCTTTGAGGAACGAGGAGAAGATACATATAATAGACTTTCAAGTAGCACAAGGAACACAGTGGATGACCCTTATACAAGCTTTGGCAGCTAGGCCGGGTGGGCCACCTCATGTCAGGATTACAGGCAAGGTTTTCTAATCTTAAATCGTAAATTTCAGATTCTAAATCAAATCAGGATTTAAACCTTAATATCAAAGAATCTATATTTTAATGTGTGTACATACCGTTAAGCTAGAATTATGCTTCATGTAGGTTATTAAATGACATTTAAGCATGTAAAAGCAAAAAACATGGTGTTCCTCTTATATTTTTTATAGTAATAACTTATTAAAAATTGAAATTTGATATTTGAGTCTTTAGGTCAATCAAAAGGTTGATTTTTTTTTGTGTCATTCCATCTTTATTGTTTAGGAAATAATAACATGAAATCATAGATTCAAGCATTTTAATGCATATACATGAGTATGGTAGATATATTGCTGTACGCAGCTTATCATATGACATTTGAGCATGTAAAAACATCGATTCCTTCTTTTCATGGCAATAATCTATATTTTCAAAATTGAATTTGATATTTGAGCTTTTGTGTCTAAAACTAAAGAGAAAATATGGTGGGACACAAAATGGTGACATAATGAATCTCGACAATTAAACTACCTCCTGATTTCAAACCATTTCAACCCTATGTGGGAACACAATGAGATCCAACGGTTCAAATCTAGCGTGTCAACAATTGTGTTTTATTTTGTGTTCAAATAGCTGGTCCAAAACTAAAACCTTTTTCTTCCTCTTCGTTCCATATCTATTTTCTTTTGAAAAATATTAATACCGAATTGTAGATTCAAGTAAGTATTTTGATATTTTTCATCTCCGAGTCATTTTTCCTCAATTGCGCTTTGATTAATTTTTAATTGAAATCTAGGAATTAAATCGTAATTGTAGAGATTTGATATAAGACTGGATTCATAGAATCCATATTTTAACGTGTATACATATAACATATTTACATGCTAGAAATGGAAATTTTGCTCAAATTAGGTTATTAAACATCATTTAAGCTTGTAAAAGCATCATTGCCTTCCTTTTGCAATAATTATCTATGTATTTAAAACTGATTTTGATTTTGAGCGTATATATCAAACTCCAAAACTTAAGGATTCGTTTGGTTTGAAAACAACATTTCGTTTTGCATTTTCAACTTGTATTTCAAAATGCACAAAAAAGAAAGTGGTGAAAACGATCAAATTGAAAAATGGTTTTAACATATAAAAATGAAAATGACTTTTTTCTTCTGCTCCGCTGTTTGGAAAATATCAAAGACTGTCTTTCTTCCCCATCGTCCTTTTGTTTTAATCGTTAGGATTTTCCAATTCCTTACTTCCCTCCCATGTCATTTTAAATGCATAATGAAATAGAAAACGCAAAATTCGTTTTCAAGCCAAACAGAATCTGAGACATTGTTTGGTTTGCTATTTTTTGTTTTGTGTTTTCGTTCAAAAAATTTGCAGACGACAAATGTATTTTTGGAAAACAACAAATTTGAAAAACGATACTAACATATAAAATAAAAAACAAATTTATTTTGTTTTTCGTGTTTTGAAAAATAACAAAAGAATGGAAAACAATTTATCCTCTTCGCCGTCCCTCCATCCCCTATGCCGTCCCTCCACTTCTATTATCCTCATATTTTGTTATAGATGTTGAAAGCGGAAAACAAAAAATACAAAACGCAAAATGAAACCAACTAGGTCCTAAGTTTTTCTGTTGTTCCATCTTTATTTTGTTTAGGAAACAATAGGATTGAAATAGTATATTCGACCTCTTGATATTTTCTATTTCAACACAAAAATCACAAGATTTTAAACTTTTTGACAACAATGACTGCAGGCATAGACGATCCGGTCTCCGAATACGCCCGAGGATGCAACTTACAACTAGTCGGAATGACGCTAACCGAAATGTCGAACAAATTCAACATCCCTCTAGAATTCACCCCTCTACCAGTCTACGGCCCAGACGTAAAGCGCGAGATGCTCGACATCCGCCCCGACGAAGCCCTAGCCGTGAACTTCACCCTCCAACTCCACCACACCCCAGACGAAAGCGTCGACGTAAACAACCCCAGAGACGGCCTCCTACGAATGGTCAAAGGACTCTCCCCTAAAGTCACCACTTTGGTCGAGCAAGAATCGAACACCAACACCACCCCTTTCCTAACCCGGTTCGTCGAAACCCTAGACTACTACTCCGCCATGTTCGAGTCTGTCGATGCCACCTTGCCTAGGAACAGCAAAGAGAGGATTAGCGTTGAGCAGCATTGTTTGGCAAAGGACATTGTGAACATAATAGCGTGCGAAGGGAAGGAGAGGGTGGAGAGGCACGAGCTTTTGGGTAAGTGGAGGATGAGGTTTAATATGGCGGGTTTTAAACCGTACCCGTTAAGCTCGTATGTGAACTCTGTGATAAGGACGTTATTGGGGTATTACTCGAAGAATTATACACTGGTGGAGACGGATGGGGCGATGCTGCTTGGGTGGAGGGATAGGGATCTGATTTCTGCTTCGGCGTGGCAATGAGTTGTTTGATAGGTATGTAGAGTAGAGTTGAAAGGTGCAGGTGGGATGGTATTTATAGTGATATGTACTGAATAGTTATAAATGTATATCTATATACTTATATGTATAAATGCGAATTTTGCTGCGATTCTTGGAGTATAATGCATTTGACTGTGGTAGTCTGATATTAGTAGTTCAGTGTTGTCATTGGTTATAGAATATGATACAAGTTATTATACGCATATACATGCATATGATTCTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256589.1	3.7e-196	LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1.1	1.3e-174	Chitin-inducible gibberellin-responsive protein 1
trEMBL	A0A6I9RKS5	3.9e-195	chitin-inducible gibberellin-responsive protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G48150.1	57.11	2e-141	499	PAT1	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04818	AT5G48150.2	422	174	3	93	507	69	490	57.11	2e-141	499
AfisC3G04818	AT5G48150.1	422	174	3	93	507	69	490	57.11	2e-141	499
AfisC3G04818	AT1G50600.1	443	190	3	76	507	155	597	54.63	5e-137	484

Ortholog group

Species	Genes
Allium cepa	g140629.t1
Allium fistulosum	AfisC3G04818
Allium sativum	Asa0G03376.1; Asa2G03969.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g36170.1; LOC_Os07g36170.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	137	507	424.7	2.5e-127

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000290	P	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003729	F	mRNA binding
GO:0004048	F	anthranilate phosphoribosyltransferase activity
GO:0005829	C	cytosol
GO:0004871	F	signal transducer activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009570	C	chloroplast stroma
GO:0009640	P	photomorphogenesis
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0010029	P	regulation of seed germination
GO:0030154	P	cell differentiation
GO:0033962	P	cytoplasmic mRNA processing body assembly
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0045087	P	innate immune response
GO:0048367	P	shoot system development
GO:0048519	P	negative regulation of biological process
GO:0048608	P	reproductive structure development
GO:0051301	P	cell division
GO:0099402	P	plant organ development
GO:1902578	P	single-organism localization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network