result

Gene information

Detail information of AfisC3G04924

Location

Gene	Chr	Start	End	Strand
AfisC3G04924	chr3	876115963	876117704	+

Sequences

CDS

>AfisC3G04924
ATGTACAAGTCGAAACTCTACGAACTTTGCCAAAAGAGAGCATGGTACCCCCCAATTTACAACGTTAGTCATTACGGCCCCGACCATAACTCAAGATTTCGTGCCAGTGTTGTCGTAAATGGTGTTCAGTTCAACGCTGACGATCTCTCCAGATCATCCAAAGAGGCGCAGAATAAAGTCAGTCAGGTGGCGTTAGAACGTCTTGCGTCGGCTCCCTCGGAATCTTTACCTCCGTCCATTGGAGCTGCTAGGGGGGGTTATTCTTTTAAGAATCAGCTACGAACTTATGCCCTAAAGAATTTTTGTGATCTACCAAAATACACACATGCATGCGAAGGGCCTGGAAATGCTTTACGATTTAAGGCAGAAGTTACGGTTGGTGGAAAAACATATCATAGTACGAAGTTTTTTAGTACAGTGAAAGAAGCTGAACGTGATGCTGCCAATGCAGCCTTGACGCTTTTGACTGCTGATGAAACTAACAAGCCAAAGGATGATTCAGTTTCAGATAATATGACTCTTTTAAACGATTCTGCACGAAAAGAAGACACAAGTATGCCTAGTTACAAGACTAGAAGTAATGGTGTGGATGGTTTTTCTTCCAAAGTTGATGTTGGAAATAGTAGTTTCGTTGATGATGTTGCAAAATCTGAAAGGCAAGCTAAGAATAACATGGCTAAAGACATCCATTTGCCTGGTTCTCCAAAGCATGTTTCTTCGATTTCTCATCCAGCAGTTAACCAGAATTTGGAGGAATCGCCTACTACTGAAAATGATGGTGCAGCTTGTCTCGATGACAAAGGTAAGAATGATTCAAAGAAGGATAACGTTCAAAGAGTTTGGTCCTTGAAAGATGAGATAATACTTTTGAATTCCATTCTTGAATTTCGTTTGAAATGTGGCAAAGAAGTAGATTCTTCCTCTCTGGAATTATTTTGCCATTTCTTGAAAGGAAAGCTGAGTTCCACAATGAAGCCTAAGCCTAGCCAAGTACTAGAAAAGGTTAAGGCTTTGCAAAAGAAATACTCTGAACATGAGATAGATTGTTTTACTACAGAACACGATTTTGAAATGAAGAAGATTGCCAGTCAGGTGTGGCCGGAAGATGTAAAGAGTGACACTAGAAGAAGGAAGTGTCCTATGTTGGAGGAAGAGGTGCAGAAATTGAACATTTTCGATCCATGTAAGAAAATTAAATTTGGGGAAGAAGCTGAAGCTTTGGAAGAAAATCTTAGGAAACAGAAAACATTGGTTACAAAGCTACAGCTCGAAAGAAGAACCCTAGAAAGGGAGACAATGGAGCTTATTTTGAAGGGAAATAACAAGTCGGATAGCTGTGCATTGCCCCAAATGAGCATCGGGTAG

Protein

Gene

>AfisC3G04924
AAAATGGCAAGTGAAATTTTACGGATGCTCAATTATCTTCATCTCCATCTCCATCTTCTTCACCTTTACTCTTTCCAAATCCAAAATATTTCAAACCTGAATCATTATGTACAAGTCGAAACTCTACGAACTTTGCCAAAAGAGAGCATGGTACCCCCCAATTTACAACGTTAGTCATTACGGCCCCGACCATAACTCAAGATTTCGTGCCAGTGTTGTCGTAAATGGTGTTCAGTTCAACGCTGACGATCTCTCCAGATCATCCAAAGAGGCGCAGAATAAAGTCAGTCAGGTGGCGTTAGAACGTCTTGCGTCGGCTCCCTCGGAATCTTTACCTCCGTCCATTGGTGAGTCTATTTTGCATATGAGCCCTTTTTTAATATCTCGTTACTCATTATCAATTTGGTTTTGTATCAATTAGTTTTCTGTATAAAAATACACTTTTTAATAGTATACTTCTATCATATTTTATGTTAGGAGCTGCTAGGGGGGGTTATTCTTTTAAGAATCAGCTACGAACTTATGCCCTAAAGAATTTTTGTGATCTACCAAAATACACACATGCATGCGAAGGGCCTGGAAATGCTTTACGATTTAAGGCAGAAGTTACGGTTGGTGGAAAAACATATCATAGTACGAAGTTTTTTAGTACAGTGAAAGAAGCTGAACGTGATGCTGCCAATGCAGCCTTGACGCTTTTGACTGCTGATGAAACTAACAAGCCAAAGGATGATTCAGTTTCAGATAATATGACTCTTTTAAACGATTCTGCACGAAAAGAAGACACAAGTATGCCTAGTTACAAGACTAGAAGTAATGGTGTGGATGGTTTTTCTTCCAAAGTTGATGTTGGAAATAGTAGTTTCGTTGATGATGTTGCAAAATCTGAAAGGCAAGCTAAGAATAACATGGCTAAAGACATCCATTTGCCTGGTTCTCCAAAGCATGTTTCTTCGATTTCTCATCCAGCAGTTAACCAGAATTTGGAGGAATCGCCTACTACTGAAAATGATGGTGCAGCTTGTCTCGATGACAAAGGTAAGAATGATTCAAAGAAGGATAACGTTCAAAGAGTTTGGTCCTTGAAAGATGAGATAATACTTTTGAATTCCATTCTTGAATTTCGTTTGAAATGTGGCAAAGAAGTAGATTCTTCCTCTCTGGAATTATTTTGCCATTTCTTGAAAGGAAAGCTGAGTTCCACAATGAAGCCTAAGCCTAGCCAAGTACTAGAAAAGGTTAAGGCTTTGCAAAAGAAATACTCTGAACATGAGATAGATTGTTTTACTACAGAACACGATTTTGAAATGAAGAAGATTGCCAGTCAGGTGTGGCCGGAAGATGTAAAGAGTGACACTAGAAGAAGGAAGTGTCCTATGTTGGAGGAAGAGGTGCAGAAATTGAACATTTTCGATCCATGTAAGAAAATTAAATTTGGGGAAGAAGCTGAAGCTTTGGAAGAAAATCTTAGGAAACAGAAAACATTGGTTACAAAGCTACAGCTCGAAAGAAGAACCCTAGAAAGGGAGACAATGGAGCTTATTTTGAAGGGAAATAACAAGTCGGATAGCTGTGCATTGCCCCAAATGAGCATCGGGTAGAACAGGTTATCCAATAGGCATTGCCTTGAAATAACATAACATAATTTTATTTTATTTTTAATGATTTTTGTTTAGAGATTATGGAATGAAGTTTAGTCCTAATGTATAAAAAGTGATTGCTATGCTATAAAATTCGGTTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020674298.1	9.9e-39	double-stranded RNA-binding protein 1 isoform X1
trEMBL	A0A2I0W2Q9	7.1e-39	Double-stranded RNA-binding protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G26932.1	36.84	1e-16	85.1	DRB3	dsRNA-binding protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04924	AT3G26932.2	152	92	3	1	151	1	149	36.84	1e-16	85.1
AfisC3G04924	AT3G26932.2	145	89	2	89	226	2	146	33.79	3e-15	79.7
AfisC3G04924	AT3G26932.1	152	92	3	1	151	1	149	36.84	1e-16	85.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00035.23	dsrm	Domain	2	68	48.3	1.1e-12
PF00035.23	dsrm	Domain	90	154	33.0	6.6e-08
PF04504.11	DUF573	Family	278	366	47.8	1.6e-12

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network