result

Gene information

Detail information of AfisC3G04933

Location

Gene	Chr	Start	End	Strand
AfisC3G04933	chr3	878105060	878109763	+

Sequences

CDS

Protein

Gene

>AfisC3G04933
ATGCTAAAATTTTAGTTTTCGTCACAATTTTCACATTGCCTCTTCTAAAAGTAATAAAATCAACAGCTATCAAATTTGTCAGTGAGAAGCGATGTCAGTGGAGACGGGGAAGAGTTCGACGGACTCGGAGGTGGTGTCTGGCTTGGATTACCAGGACACGGAGCTCACCTTGGGTTTGGGTCTATCCTGGGTCCAGATCCGAACCGAAAGAAAGAGAGGCTTTGCGGAAACCGTCGATTTATCCCTCGCCCCACGTAGTGAGGACCAGACTGCAGAATCCACGGCCGTTGCTAATTCCGGCAAGCTTCCTGCTGCTAAGTATGCTTTTTCTGCTCTTTCATTAGGATTTGGATTTATTTGGAATCTGCATAATCATTGACTGTTTTCAGTTCAGTTGGTTTTGTAGTTTTGTGAATTTGCGAACGTAAAGTTGGACCTAATTGTTTGCTTCGCTTCGCTTATACTCTATTATTAATTGAACTGAAGTCGTTTATCGGGATTATTCTTGGTTAGGAGAAAGAGAGTGAATTTGGTAATGATTTTGTGTTATTAACATGGAAAGTTCTCAATCATTCAATCATGTTTTGTTATGTTACGCAGTGCAATCTCTTATCCTATGCGGATCTAAAGGATTATCTTGTATTTGAAATCATTTGCTAAATATAACTCGAAAGCTAATTCACACTGTATATATTAGTTACCTCTTTTTACGCACGTCTTACGCATGATGTTTTACATGCGCACGATGATTTAGCTGCAAAAGGACTTTTGTATTGAAAATATTCTTTGTTTCTTAGAAAAAATGTTATCTTATCAACTGGCTTTAATCAACCATGATCATTCTTGTGCAAAATGGAACCGATCAAATGCCAATCTTATATTAAATTATAATTGTCTTATCATTTACCTTTTTCTTCATTTTACACTAACAAATTGAGAACATTTAAAGAGAACATTTATAGCTATTTAATGATTTTGATAAATCTTTAGTTTGACCTTCTAGTTTCTACTGAAAAATTTGGTTTTTGATTTTAAAATTGGTAATTGGTGTCCGGATAATTGGAATTCAACACTTCTCGATCAACTTTAGAGACCTTTATAACATTAACATTGATCATTGACAAAAATTGAGATTTCTTAAATTAGATTCAGTTTTCTTTTTTTATGGTAGGAGAAATATCCCTTCCCATTGGTTGGTTCAGTTAATTTCCTTTTAATAGTTAAAGGTTGATTTAGTTACCTAACCTAGAATGATCTGGTGGTAGTTTGTTAACTTACGTCTCCACATGACAAATAACACCGAATGTAAAATTAACTGGAGTATTTTGATATATGTATTGTTTAGCAATAATCATTTATTTACTTGTTATACTTGATCAAATTGCTTATATCTTTGATCGTTGTGCAGATATTTTTTGCTGTATACGTTCACTAGGCTAATATTTATTTATGCAGATAGATCAGTCTACTCATATAACCAGTTTTAACTGTACACTATTGCAATTTATATCACATCAAGCTATAACCTGCAAGAAATATTGTGAACTTTTGATAGAACAGTATGATGTCATCTTGTAGTTAACCCATTACATCAATATTTTTGAAATCGATACAGTCGAAGGATCTATTCTAGATATTTTTATGCACAGTGTTGAGTGTCATATCTAAATATATATCTTCCTTCCATATATTCTAAATATATCTGTGTGATTTTTCAGGGCACAGGTAGTTGGATGGCCACCTGTTAGATCATTCCGTAAGAATGCACTCAAAAGCTGTACCTATGTGAAAGTTGCAGTTGATGGAGCACCTTACCTGCGAAAGGTTGACCTTGAAACTTATGAAAGCTATGAACAGCTATTAGGCGCTCTTGAAGATATGTTCTCTTGCTTCAAAATTCGTATGTAATGAATTTAGCGAAGCAAATATTTATTAAAGCTTTTTACCGTTGTTGATTTGATTGTTATTACTGTTTTGAATAGGGAACATTTTGAATGAGAGGAAGCTGGTTGATCCTGTCAGTGGGACAGAGTATGTACCTACCTATGAAGATAAGGATGGTGACTGGATGTTAGTTGGAGATGTCCCATGGAAGTAAGTTTCAATTTATTATCTTTTGATTCTATTTGGATGTAGATAGGGAACACTATTTTGTCCATGTTGGTTTGATACACCAAGAAGTTGGAATGAAAGTGTGTAAGATAACGCTTTGCTACCTGTATAGGTTTTGTAAGTTTATTCTGGTTGAATTAACAGTGTAATTAAAGGCAGATATAAAAGTGTTATGCCATATAATATGAAATTTGTTTTTAAGGACAGACTACAACTTGAGTTTTGTCTTCATGACTCGTTGCCTTCAAATATGTATCCATATGAATTGATCCCTATAAGGTAGGCTTTATTGATGGGACAaACCATACAATTACAAGCTGGTGGGTGACTGTAGGACGaCGTTAACATGTGAACTAGAACATAAGATATAGGCTAGGAATATTGTAAATTAGTTTGTGCATATCGATTATACCTTCCAACCAAGTCCAATATTTTCTAGTATCAACGATGGGATCCGAGTGTAATCAAAATTTAGCTTGGTTGACCTTTGCAGGAATTACAGTTATGAAGACCTATCCCTGCATTTGGGTAAAACTTTAAAAATACAGTGTAAATTAGTCCTGGATGCCTATGTTCCCATCTAAGTTCCAATTGACTTATTTGTTCGAGATTTTCCCTCAGCGATAACATTTCCAATTTGATCATCAGCTTTTTGAATTTTGGCGCACGTTGGCATGCATCCATTGTGATTAAACTAGTTATACTATGTAGTTTTTGCAACAAATTGCAGAGTCCAACATTTTGCTGAAACTATTATGTTACTTTGGAAAGCTTATCTATAAATAAAGTTTTTTGCAATTGCTTTGCTAAGGCAAATACAATCGGGACATCTTTCACTAGTTCCGTAAAGTCATTCAAGTATCTATTGACTTCTTTTCTTGACACAAGGTTAGAAGATCCACAAAAATTATAAGTTAGACAGTTTTACTTTGTGAGCATCACAGTGCATAAGTGATGATCATGTATGTGAAGTTGTAATTTTGGAATATATAAAGACAGCTTTCACTTTCTACGCAGCTAAGCATTGCCATAATCTTTTCACAATGCATTACCTGAAATTTATTTGTGCCACCTTATATGAGCACTTGTAATCAGATTGGTCTAGGATTTGCATTTTTCATTTTCAAGCATACCAGCGGAATGGTTTAAGTATGTCCATGCTAGCTAACTTTAAAGTTGAAATATTCATCAGGACTTCAAATTAATTGTTATTTTGATTACGGGTAATCTAGGTTTCTTAATACATGTGTATGCATCATGCAAATTCATGTACGATATTTGAACCACCACAGCTATCATGCGTCTTGCTACGTTCTCCAAGGTGTCAGTTATTGTTATGAACTCTACTGCTATGTTCATGGCCATAATGTTCCTCCCATGATACACCCACAAACTTGTTTCACATATATCATACTTGTTGGGAATTTAACATCTTAGTTGTGATCAGTTAGGTTGCTGGCTTATTGGTGTATCAACTGTTATAATGATAGTGCATGAAATAGAATCTTGCAACTTTTATTTTCGAGTGCTCTGTTTATTTAGTATAATAAGTATCTCCTTTGCATAGAATATATACATAATCATGCAATCCTAAATGTACTCTTGGCATATCGTTGTAGCTTTGTGCTAAAGAGAACATAAAAAATAATGATCTTATTCCTTTTGGATTTAGCAGTAAGTTatACTAATTTTATTATGTTCAGTGAAATATTTATGGGTGGTTCAGCAAAACAACCGAACTACCCTAGACTAAAAGTAAAACAGTAACCCATTGCTGAATTACCCGCAACTTCTATGAGCTTGATTCTTTCGGTATCATATGATTCTTATATTCTTATATTTATGAATAGAATAGGACATGAACCAACACTTGACCTGTAAATTTATCTATTTGCAGAATGtttgttggctcttgcaaacggctccgcctgatgaagagttcagaagttggtaatcttggtaagctgtttttatttgtctctgctttacttgtattttagacctcagttggtcacactgtgtttacctagattatttcatatttcatcattggaaagcatttcttcaaaagcttctttcacaaattataaaaatgattaaagttcaatgatgaaattgaactactctagctttagcctgacgtaaatgagatgttatgaccatctgacttatgttttatgtttgtaaatacagctccgagagcatctcaaggtagcacaaacaacacaaggtgaaaattgaccggatgcctttttaatccgacgatatgtttaatcatgtacagggatttgtttgtcatccTtcttgtttttctggtgagttttgaccgatcatctctttcagcagaaataagagaaatgtgttgtattagtttgaggaagaagatgaatataatctttacatatattaccctttTcctacttgtataagcgcagacttttgcattatgtgcttctcaccattgtgtccgactaaaaccgtttgtaaaagaagctgtagattttgtattattaaaaagtccagttagttcgttactcctaggcttgacggttttctttttctttttcttcttgttctccatgtgcaaaaaca

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008811586.1	9.9e-79	auxin-responsive protein IAA1-like
Swissprot	Q5VRD1.1	1.3e-51	Indoleacetic acid-induced protein 1
trEMBL	A0A8B7D2B9	7.1e-79	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G04250.1	49.77	3e-50	194	AXR3;IAA17	AUX/IAA transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04933	AT1G04250.1	217	75	4	18	200	7	223	49.77	3e-50	194
AfisC3G04933	AT3G04730.1	235	82	5	18	206	2	236	45.53	1e-47	186
AfisC3G04933	AT4G14550.1	229	82	6	18	206	1	228	46.29	2e-46	182

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	35	94	52.3	6.2e-14
PF02309.13	AUX_IAA	Family	94	197	170.6	4.5e-50

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003993	F	acid phosphatase activity
GO:0005634	C	nucleus
GO:0005740	C	mitochondrial envelope
GO:0005768	C	endosome
GO:0005802	C	trans-Golgi network
GO:0006109	P	regulation of carbohydrate metabolic process
GO:0006417	P	regulation of translation
GO:0046983	F	protein dimerization activity
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009630	P	gravitropism
GO:0009733	P	response to auxin
GO:0009753	P	response to jasmonic acid
GO:0009941	C	chloroplast envelope
GO:0010311	P	lateral root formation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030943	F	mitochondrion targeting sequence binding
GO:0045040	P	protein import into mitochondrial outer membrane
GO:0080167	P	response to karrikin
GO:1901332	P	negative regulation of lateral root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network