result

Gene information

Detail information of AfisC3G04977

Location

Gene	Chr	Start	End	Strand
AfisC3G04977	chr3	885468854	885472255	-

Sequences

CDS

Protein

Gene

>AfisC3G04977
GAAGAATTTATTTGTTGAATACAGCTAGCTCCAAGTGGAGCATCGATCATCGCAGAAATTACAAATTAGGACATAATTCTAGTGGTATACTATTAGCTTGCCAATGCATGCATTAGTCATGCATCTTATAGACTATTAGCAAGATTCCTAGCTTAATCGAGATTATATCTGATTATGTGACATATCCAGACTGAAAGCCTGTTACTATCCTTGCCTAGTTTAAATTAAGACACTTAAGCCAACTACTTATAATGGACTACCTCCTAGTGTAAGTGTGACATTCTTCTATAAAACCCACACAACTACCTCCTAGTTTCTATACCATGAAAATCTCCACTACTTAAGAACAAAAATAAAAAGTAAAAAATATATCTATCATATATATAGTATATACAATATAGTATATACAATATCGATGGATGAAGAAGGAAATAATTCAGACAAGAAGATATGCAGTAGCGAAGAAGCTGAAGTGAGAAAAGGGCCATGGACTATGGAAGAAGACCTTATCCTTATGAATTACATAGCAAACCATGGGGAAGGGGTGTGGAATACACTTGCCAAATCAGCTGGTATGTATATGTAGTAAGTGTATATATATGATATATTCTAAGTTTTTTCATGAAGATTTTAGTTAGCACACTATTTATCTTTTGGATTTTGATATGATGAACTATAAGGGTTGAAGCGCACTGGAAAAAGCTGCCGCTTGAGGTGGCTGAATTACTTAAGGCCAGATGTCAGGAGAGGGAATATTACACCAGAAGAGCAGCTTCTTATAATGGATTTGCATTCTAGGTGGGGAAATAGGTAAGAACTCGTGCATATAATGAACCTCTATTTATAGATATATGCATCATTCATGTGGCTATAGTTTGCTTTGTGTGGTTTGCTTATGTGCTGTACATGATGATTTCTTCTTACCTGTTGAAAATAATTTGCTAGTACACTCCCATCACCTCTCCCATTATCTCTTTAAAGCTTTACTTGACATAAATATCAGATGTTGAAACCAAAAATAGTAAACTGTGAGAACATAGATTAAATTCAGAGCATTCTGAGCAACTGGAAGAATATTTGGATATACTGGGGTTACTTAACTATGACTTTACATCATATTCATAACTACAGAAAACAGAGCATTGTTACATAAAGCCTATTATCAACCCAAATATGTTACAAAAGTGTAAACTATGTGCTAGATTGCTTCTTCATTTTCTAGACCAATCTATCTGGTTTACAAATGAGTATCCTTCACCGTTTGAATATTGGTATGTGATAATTATATTTCATGTTCAGGAAAAGATTATCATCATTAGATAAAATATAGATGAAGAAAAATAGCTTGAAAAAAAAAAATCATCCTCCTCCTCCTTTTTTACTGAATGGTATTTGTTACTCTTTTTTTTAAACGTCATAATAGTATTACTTCCTGCTTCTTAATTGTGTGGTTAATTAAGGTTTTAGTTTGATTAACTTAGCATATATAATAGTCAAGTTAAAAAAAGGCTTTACTTTCAATCAATATTTTTTTCCCTTTTTCTTTAATACTCGAGATCTACTGAATTTGATCATAAAAAGAAGAGTTCTTATGTCATTCTAAAATTCCTTTGGAAGGATTTTCCCAGTACAAATTTGTTTTAGTTATTATTGTAGTACAAACATAGTATTACTAAATACTAATTAAGGGCAGGTGCAAGTGCATGTGCATGTTAACATCATAGAATAAAATATTGTGGTGAGTTGTATAATACCTTAATTATAGCTTAACATATTAATATAGTAACCTATTTAATGACAATCGTGTTTGTTGTAATCTTACCAAGCATCGCTTTCATTTCTTAAAATGAATTGAAAAGGTCTTATTGAGATAACCCATAGAGTTTTATAACCACATGTTCTATAAGAAAAAAAGACCATATTGGTATATTGGTGAAGTTCATGCGTACTTTGATCATTTTTAACATCGGTATTTCTTTATGATATGACTTAAAAACTTAGGTTCCGTTTGGTTTGCTATTTTTAGTTTTGTGTTTTCGTCGAAACAAAAATTTGCATTTATTATGTATTGTTTAAAAACAGACAATTTTGAAAAATAAAACTAACATAGAAAACAAGTTTATTTGATTTTTCGTGTTTTGAGACATAACAAAAGGATGAAATACAGTTCATCTTCTTCATTTTTCGTCCATCATCGCGATGACTAAACGTTGTAAAAAATTTTCCACATTTTTTTGTATTTTGTAGTGTACGTTGAAAATGCAAAACACAAAACTCAAAACGAAACCAAACGGGCCCTTAGTTTTCTTTGAACTTCAACCCATTTTTCCTAGTTTTCTAGTTGTTTTATTATTATTATTATTTTACAAGAGTAATACGTATTTTATTCAATCAGAGCACTATTTTCTGATTTTCAAGTTTATCTGCTAATCTATTTATGATGTACGAGGTGGTCGAAAATTGCGAGGCAGCTACCGGGGAGGACCGATAACGAAATAAAAAATTATTGGAGGACCAGAATCCAAAAGAAACCAAAGCAAGGAGAAACCTTTGATTACATGCCAACTCAATTAATGGCAGATGATGCTAGCACAAGCAACCCTACATGCATGGACTTAGACTACTGTGGAGCAGCAGATCCTCAAAACTATCAAATGCAGCCTAACACTAACCAAAGCAACAGCACCATCAACGCATTTGGTGCACCATCGTTCTCTACTCCTGATGCCTGCAGTGAAAACTTCTGGACCGTTGATGATTTTTGGTCAATACAGCCTTCTAACGGTGCAGGTGATTGATGGAGGATTATTAAAACTTATGTTATATCAGCATTCTATATTATCATGCATGCATGCATGCATGTTCATAGCATGACTAAGAGAAAATCAAGGTAAATTGATATTACCTTCTGATTTATATATCTTAGCTTATGCATTTGCACTATATGATATTTTTTATTATTGTGAATTAGTGTACATATTAATTAATAGTTTATCTTCACATGTTTATACTTTGTTATGTAATAAGTGAATCTTACTCTTCATTTGGCGTGTGTTTAAATATTTCAAAGGTTTTTATGTGGACTACTTTGCTATACTTGTAAGATGTGGATATAAGAGCTCCTCCAACCAAATTTTGGTTGGATACTATATTTTACAGGGTTACAGAATGTAACCCCATATTTTTTTCAACAAATATACAGTAGACGCTTGTTGAATAACCGTTTAGTTTTTAGACGCTTTGTTCAACTAGTACTTGATATTTAGACGCTGATTGAACAAACGTTTGAGGTTCAGAAATTATAATTTAAAACTACATGTATGATTTCAGACGTTTGAACACAGATTGTTTGTACGGCAAGCGCCTGAAGTTTGTGCGTCTGTTCAACAGACGTCCAAAGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268272.1	3.5e-79	myb-related protein 305-like isoform X1
Swissprot	P81391.1	3.7e-62	Myb-related protein 305
trEMBL	D6MK84	2.8e-86	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G40350.1	59.00	2e-60	228	AtMYB24;MYB24	myb domain protein 24

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04977	AT5G40350.1	200	74	4	17	208	14	213	59.00	2e-60	228
AfisC3G04977	AT3G27810.1	203	65	6	17	202	17	218	59.11	5e-60	227
AfisC3G04977	AT3G01530.1	199	72	3	16	208	21	201	51.76	1e-54	209

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	22	69	57.9	7.6e-16
PF00249.28	Myb_DNA-binding	Domain	75	118	54.4	9.2e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009892	P	negative regulation of metabolic process
GO:0010091	P	trichome branching
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048629	P	trichome patterning
GO:0048765	P	root hair cell differentiation
GO:0080086	P	stamen filament development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network