result

Gene information

Detail information of AfisC3G05013

Location

Gene	Chr	Start	End	Strand
AfisC3G05013	chr3	892638292	892639858	-

Sequences

CDS

Protein

Gene

>AfisC3G05013
CAATGCTGTCTACTGCTGACGATCAAGAAAATGCAGATCATCCCATTCTGCTCCTAACACTTTGGCCGCCTGGTCAGCAAAACCCTAATCACATCTCTTCAACTTCATCTTCATCATCATCCACTACTCACTGCCCTACCATCACCACTTCTTTATTGCTGAAAAATATATCACATCATAACGATACCGATGAGTCCAATGTCGCCATTGCTCTATCCATGGCCCCTCCTGGTGGCTCTTCCTCTTCGAATTCTAAAAACATTAACCTAAACATGGCTCCAACTCAATACTGGATTCCTTCAGCATCTGAAATACTCGTGGGCACTACTCAGTTCTCTTGCGCTGTCTGCAATAAGACTTTCAATCGTTTCAATAATATGCAGGTTTTTATTGCACCCATATCTTTCTACAATTTTACTTTTTTTTCTGTTAATGTGTGGGATATGATCACTTACTTTGATTTCAGCCGTCATTAACCGTTGAAATTCATATTAGAATCTACTATAGAAGCCGTTTAAAAACAGATATTATCCTTGCATTAATTTTTCTTCTTTTAACCACTTTTTGAAGCTTTTATTATTTAGAAAAAAAATTGGAATTATTTTAAAGTTCTGAACTTTTTTATTAAAGTTTTAACAATGTTTGAAAATTTGAATTCTTCTAACATTTTGACTCCTTCAAAAAGTCTGAATATTTTTTGAATTCATGAAATAATTGAATTTTAAACTTTGATTTATTTTCCAAAATTTTGTTTGAATTTCATAGAAAATAAGACCAACTTTTTGCTTAGAATTTTTTAAAATGTGGAACAATAATATTATGTTTTTTTTTtTCTAGGAAGGAAACTTCTATTTTAACTTTACTAATCACCCTATTCAAACAACATACAATAAAAAAAACCCTAATTTATTTTACATGTACTTAGATGCATATGTGGGGGCACGGTTCACAGTACCGAAAAGGCTCAGAGTCGCTACGAGGGGCTTCGAACATAAAAATGGCATCACCAACCATGATGAGGCTACCATGCTACTGCTGTGCCGAAGGATGCAAGAACAACATCGATCATCCAAAATCTCGACCGTTGAAAGACTTCCGAACGCTCCAAACTCACTACAAACGAAAGCACGGTGCTCGGCCTTTTGCTTGCAAAAGGTGCGGGAAGACGTTTGCCGTTAGAGGTGATTGGAGGACTCACGAGAAGAACTGCGGCAAGCTTTGGTTTTGCATTTGCGGTTCGGATTTCAAGCATAAGAGGAGCTTGAAAGATCACGTCCGTTCGTTTGGCGGTGGGCATGCACCGCACTTGGGGGAGAGTGTTCTCTTGGACGAGGAGGAAGAAGAGGAAGATTTGGAGAATGGGGATTATAATAATCAAGATGGTAATATTGATCTTAATGACGTTCACATGTTTTATTGATTGTTGATTAAGTAGGAGGCTTAGCATTCTAATGTTTTATTAGGTATATATATTTTTATTTCATCAAGTTTGTTATCAGCTAGGGCAAGTGACTGGAGACTATATTTCTATGTATATGTTCCTTGTTATGTTGTATGACTGTTTCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010924131.2	4.2e-91	zinc finger protein WIP6
Swissprot	Q9FX68.1	2.2e-81	WIP-domain protein 6
trEMBL	A0A6I9RDB6	3.0e-91	zinc finger protein WIP6

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G13290.1	63.71	3e-87	318	DOT5;WIP6	C2H2-like zinc finger protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05013	AT1G13290.1	248	69	4	11	254	11	241	63.71	3e-87	318
AfisC3G05013	AT3G20880.1	174	33	3	95	267	240	403	74.71	4e-78	288
AfisC3G05013	AT3G57670.1	185	49	3	95	278	201	378	69.19	3e-77	285

Ortholog group

Species	Genes
Allium cepa	g357087.t1
Allium fistulosum	AfisC3G05013
Allium sativum	Asa2G04211.1
Arabidopsis thaliana	AT1G13290.1
Oryza sativa	LOC_Os09g13680.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12874.4	zf-met	Domain	111	130	17.7	0.0032

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006997	P	nucleus organization
GO:0008270	F	zinc ion binding
GO:0009813	P	flavonoid biosynthetic process
GO:0009860	P	pollen tube growth
GO:0010087	P	phloem or xylem histogenesis
GO:0010305	P	leaf vascular tissue pattern formation
GO:0010500	P	transmitting tissue development
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0031965	C	nuclear membrane
GO:0048364	P	root development
GO:0051301	P	cell division
GO:1990058	P	fruit replum development
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network