result

Gene information

Detail information of AfisC3G05238

Location

Gene	Chr	Start	End	Strand
AfisC3G05238	chr3	937546460	937549124	-

Sequences

CDS

>AfisC3G05238
ATGTCAGAATCATCTCCGGCAAAGAAGATAAAGAAAAGCGAAGATGATGTTTTGGAACTGTTGAGTAAGTATAGTACGACCACAATTCTCTCCGTTCTTCATGAGATACATGAGTATACCGTGAATCATCCTGATTCCGTGGAAATAGATTGGACACAACTATGTAAAAATACATGTACTGGCATCTCAAATGCTCGGGAATATCAGATGTTATGGCGAAATTTAGCGTACCAGCACCCTATAGAGGACGTTAAAAATGGAGCTGAGATCATGGATGATAACAGTGATTTGGAAATCGAAATAGAAGCTGATCCACAGCCAACTGCTGAAGAGGAACTCAACGCTAAAGAATGTGTTAAGGCATTACTTTCTGCTTCTATTCCTCGTTTAAGTTCAGTAGATGAGGACATGCATAATGGTTCACTATTGCTTGATTCGCCCGATAAGCAAAAGCCAGTCCAAGCTGTGGATGAAGGGATGGATGGAAATGGTCTACCTAATGGCAAGAAGAAAAGGCAGCCTTGGACCAAAGAAGAAGACGATGACCTAATAGAACTTGTAAAAAGACACGGCGAAGGAAATTGGACAAATATTCCAAAATGCGATTTTAAGCACAACAGAACTCCTTCTCAGCTATCTCAGAGATGGACTCTTCTTCGGAAAAAAAGTTGCAGCACAAACAATGGTGATGGAGCTAAATGTAGCAGCTTAACTATAAATGATGAGAGGTTAGCAGCAACACAGAAAGCTATCTCTATGGCCATAGACATGCCTATGTCTGGAAGCAAATCAGTGTATTCATTAAGCCAATCACAGGACAAAACAACACCTAATATTTTCAGAAAATCACACCCACTTCTCAAAAAAACATCATTTTCTACAACGAAGCATATGCTGAGACCCAACTCTCTAATACAGGCTGCTGCCTTTGCTGCTGGGGGGCGCATAGCGAATCCTTCTACTGCCGCCTCACTCTTAAAGGCAGCACAATCTAAAAATGCAGTTCGTATAGGACCTGGACTCCAAATATGCTCAAGTATACCTAATAATAGTAGTACTAATGCATCTGTGAGTCAATCAATTCTACCCTCATCAACTCCAGCTTCATCTGGTTCAAGCTTTGGCACAACTTTGAGTTCTATGAAGTCAGTAGATTCCAAGGATGAAGCAGCAGAAAATGCCGAGAAAAGGATTGCTGCCAGTGATAATAGTAATGATGGTACTTTGAATGAAGAAAGAGTTGCTAAAGAGTCCAATGTTGGTGAAACTGAGATTGTGTTTGAGAAGGAAATTACAGATCACACTGCTGAAACTGGAAAATGA

Protein

Gene

>AfisC3G05238
AAAAAGTAAAAAATATCAAATGCCCAATCCCCAAATCGGAAACCTAATCGCCATAATCCGAGACATTGGACCTTCAGCCTCGTCCTTTACCTCCGACGAGTCCGACCCCGCGACCCTCCCCTCTTCTTTTCTCGACCTCTCTACCGCACTGAACCCTTCAATTTACTTTAATAATCTGTCTCGATTCCCTAAAAATTCAAAGTACCGATCCAAACCATGTCAGAATCATCTCCGGCAAAGAAGATAAAGAAAAGCGAAGATGATGTTTTGGAACTGTTGAGTAAGTATAGTACGACCACAATTCTCTCCGTTCTTCATGAGATACATGAGTATACCGTGAATCATCCTGATTCCGTGGAAATAGATTGGACACAACTATGTAAAAATACATGTACTGGCATCTCAAATGCTCGGGAATATCAGATGTTATGGCGAAATTTAGCGTACCAGCACCCTATAGAGGACGTTAAAAATGGAGCTGAGATCATGGATGATAACAGTGATTTGGAAATCGAAATAGAAGCTGATCCACAGCCAACTGCTGAAGAGGAACTCAACGCTAAAGAATGTGTTAAGGTATGGAAAATGCATATTTGTATAAGATTGGCAAATGTTTGAATTAGCAAACAGAAAGAAACAAATATGAAATCTTTCAAACGTCTATTTGGATACATGTTAAATTGATAATGCAAATTGGAGTAATATATATTGGATGAACACTCCAAATATTATCATTATCATCATGAGCATAATAGGAAAACAATAATCATATCGAATATTTTCTATGATTAGCATGCTTACCAAACATCAAACTGTTGGCAAATTATGTGCCCTTACTTAAATTGAAGTATAACCAGTGGGTGGAAACAGTAATAGGTATGAAAAAGTTGGAGAATATTAATTTGTCTATTGTAACAAACTACATACCCCAACTTCATTACAATAGCTATTTAATTATTCCACCGCTGCTCAACTTAGTGAGAAAAAGATGTTCTCTGAATTCCGAACTTATATTATGAATAATACCTATTACTATATCTCGACATCATGATATTCAGTTTTCATTACTCTAATGTTTCGAAAACATACTAAGGATTAGAAAAATGGGTTGCCTTTGAAACAGCTGAATCACCCATCTCTGAGAACATTGACTATACATAGTTCTAACACAAAATTCCCAAATGCATTGGCTGAAATCATGAATCTGCTTATCTGCATCATATTTACCAATATGTTTAACTAGTATTATTTCAAAATAATGAGCAGGCATTACTTTCTGCTTCTATTCCTCGTTTAAGTTCAGTAGATGAGGACATGCATAATGGTTCACTATTGCTTGATTCGCCCGATAAGCAAAAGCCAGTCCAAGCTGTGGATGAAGGGATGGATGGAAATGGTCTACCTAATGGCAAGAAGAAAAGGCAGCCTTGGACCAAAGAAGAAGACGATGACCTAATAGAACTTGTAAAAAGACACGGCGAAGGAAATTGGACAAATATTCCAAAATGCGATTTTAAGCACAACAGAACTCCTTCTCAGCTATCTCAGAGATGGACTCTTCTTCGGAAAAAAAGTTGCAGCACAAACAATGGTGATGGAGCTAAATGTAGCAGCTTAACTATAAATGATGAGAGGTTAGCAGCAACACAGAAAGCTATCTCTATGGCCATAGACATGCCTATGTCTGGAAGCAAATCAGTGTATTCATTAAGCCAATCACAGGACAAAACAACACCTAATATTTTCAGAAAATCACACCCACTTCTCAAAAAAACATCATTTTCTACAACGAAGCATATGCTGAGACCCAACTCTCTAATACAGGCTGCTGCCTTTGCTGCTGGGGGGCGCATAGCGAATCCTTCTACTGCCGCCTCACTCTTAAAGGCAGCACAATCTAAAAATGCAGTTCGTATAGGACCTGGACTCCAAATATGCTCAAGTATACCTAATAATAGTAGTACTAATGCATCTGTGAGTCAATCAATTCTACCCTCATCAACTCCAGCTTCATCTGGTTCAAGCTTTGGCACAACTTTGAGTTCTATGAAGTCAGTAGATTCCAAGGATGAAGCAGCAGAAAATGCCGAGAAAAGGATTGCTGCCAGTGATAATAGTAATGATGGTACTTTGAATGAAGAAAGAGTTGCTAAAGAGTCCAATGTTGGTGAAACTGAGATTGTGTTTGAGAAGGAAATTACAGATCACACTGCTGAAACTGGAAAATGAACTTAAGAAGTAGAAAGATGAAGGAATTTAGAAGAGCAAGGAAACAGCTGTGCAGCAAATAGTGTCACCAAAGGTAGCCATACAGTAGTAGATGAGAAGAAGTGAGCTGACCAAGATTCTTTTGAATGAAATCGAAGTAAGTGAATCGTCTCCATGTTCATATACTATCCTCAGGTGTGGGTTTTAATAATGATTCACAAACTAGTGATACAGTTGTTATTTGAAATAGATTTTTTGACAGTTTCCAATGCATTTTTGTTTACTAGAATTGTCGAACATTTCAAAATGGACCCATACTAGATTTAATGGGAACAATTATTGTCAGTGTTCATCGTATGACAGATTTTCTCCAACAAGAAAGATATTATCTGGTACGAGATCCGAATGAGACATAGAAAGACCAGTTTACAATATTTCATTTAGCTCTATTAGAACA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245231.1	1.5e-76	uncharacterized protein LOC109823368
Swissprot	P10244.1	5.7e-04	Myb-like protein 2
trEMBL	A0A5P1E711	1.1e-76	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G58220.1	35.69	1e-41	167		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05238	AT1G58220.1	269	138	7	13	255	15	274	35.69	1e-41	167
AfisC3G05238	AT1G09710.1	244	115	7	13	227	17	254	38.52	1e-39	160
AfisC3G05238	AT1G09710.2	244	115	7	13	227	17	254	38.52	1e-39	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	172	217	40.0	3e-10

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network