result

Gene information

Detail information of AfisC3G05545

Location

Gene	Chr	Start	End	Strand
AfisC3G05545	chr3	987893082	987895511	+

Sequences

CDS

Protein

Gene

>AfisC3G05545
ATGAACACTAGTGCTCATGAAGGTAATAACTCTTCCAACATGCTTGAATTTCAAGGTTACAGCCAAGAATTCCTTGACTATCATCATCATCAAAACCAATTTTTGCATCCTTCAAATAATTTCAATCTACAATGGCCAACTCAATCTACTGCTCCGATCTTTGCTTCGTCACTTCCTCCTCTTCCTCCACTTAATGCATTATGTAAAGGTTGGAACCTTGATCATCATTTTGGGTTGGCTAGCTTTTACAACCAGTCTTCTCAATTCGGGACTTTTCATGGGGATATGTCATCAAAGTTTATGAGTCCACAGGAGATTATGGACGCCAAAGCACTTGCTGCTTCTAAAAGCCACAGTGAGGCTGAGAGGAGGCGAAGGGAGCGTATCAATTTGCAGTATGCGAAGTTGCGTAGCTTGCTGCCTAGTACTGCTAAAGTAAGTCATCTCTAACTTGGCCAATTCAGTTTTTATATGATCAGTGCATATGCATATTCATTTCTGTTATTATTTATTTGTTTATAAGATATATGTACAGATTATGGGTAAGTTGTTCATTTCTACATTTACTGTAGTTTTTATGTATGTTATCTTAGTTAGCAAGATCTCATAATTTATAGTGATACCCAGAAATTTATTTGGCTTGAATTTTCAATCTTAACCTAATTCTTTGATCTATAGTTAGAACTGATGATAATAAGAGAAGGATAATGAGGAAAAAAGCCTAGAGAGGTAGAATCCTAGAGACGAGACATTTGTATAAAAAGTAGCAACAAAAACACAAGAACAGAAAGCTAACAAGTGTGTGTTTTTATGCCGGATAAAATAGCTGCCCCAGGAACATTGTCAGTAAAAATAGGAACCTGAAAATAATAGAATTCCTTTAGAAAGAAAATAGTCTATAAACCAGATATAAGATATTATTATTATTATTATTATTATCTTATATTAATGATAAAATGATTCTAGTATCAAATATTTATCATGAATATTTTTGAATTCTTTCTTATTTTGTGTGGAGGCAATGTTAATCACAATCAACAAATTAATTCATATTATTTGCTTTTAGCCATGTAACTTGTATAAATAGATGAACATATAAACGAATAGAATATTCTTAAAAAATATTACTTTATGATTCAACATTCAAAATAGATACACATAATTCCTGCATATGCAATATTTGACATTAACATGTGAAATTGTGCATGCAAACTTAGCAAAGTGCTCTTTCACCCTGTTAACTACTTTCTACTGTCCATGTTCAAAGCGTATGCCCTAGCTAGAAACATGGATTGCCTTTTTTTTTTCTTCCCCTAAAGCTCAAAGAAGTACCAATGTGTAACAATTTCTAGCTTTTGTTGCTACTCCAATATAGCTAATCTAGATAAGCTAAAAAAAGCCAGTCCTTTCTACTTTAATTGCAGAACTTGTTTTTCTTTTCTTTCTAAAAAAGGCAACAAAACCATTCCAAAATCCTTTTATTCAGTTAATCAAGTACACATCTTGAATAAATAAATAATAAATAAATAAAATAAAAACTTGTTCAGACTCTTTGTAATATAGGCCTTTGACCATTATTACTACTGATATGACAGTTGCTCTACATTCAAAGATTTTGGGTTCAATTGCTATAAACATATAGTAGCCTTGCATTTACATCATAAGGATTTGGAAATTTTATCAATATAGACCATTTTTGGCAGTATTAGCCAGAATAACTCTAGTGTATTTGGTCATTTTAATTCACATAACCAGAACATGACCTATATTTGTAAATAGTTTTAAAACCGATTCAAAATTGAAACAAGTTTCAATTCAAAAGTGATCCAAAATGATAAAATGGCAAATATGACTTCCTTTTTCTCTTAATACTTCTATAGACAGACAAAGCATCATTGCTAGCAGAAGTAATCCAACATGTGAAAGAACTAAGAAGGCAAACATCCGAAATTGCAGAAGAAAGCACATTACCAACTGAATCAGACGAACTAACCATAGAATCAACATACGAAGATGATGGAGAATTCATGGTCAAAGCTTCATTATCTTGTGAAGATCGACCCGATCTTCTTCCTGATTTAATCAAAGCACTTAAAAGCCTTCATCTTCGCGCGCTTAAAGCTGAAATCACCACACTAGGTGGCAGAGTTAAGAACATGCTAGTAATCACCAGCGATGAAAACTTCGATCATGATCAAATTAACGTTACTTCGATTCAAGATGCATTGAAGGCTGTTATGGAAAAAAACTCGTCTTCCGATAGTCAATTGATCGATCAGTCGGTTAAAGGCGGTATCAAGAGGCATCGAACTACTACTACTCTTTACTCAGTTTAACTTAATACCAGAAATTATTTAGTTGCATACATAGATTAATTTCTATATATAGTTATGTGTATTAGTGTGTTTTTTATGGGTGTGCTTTTTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019704607.1	8.9e-57	transcription factor bHLH30
Swissprot	Q9S7Y1.1	2.2e-44	bHLH transcription factor bHLH030
trEMBL	A0A7M3UQK0	4.5e-58	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68810.1	61.42	1e-53	206		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05545	AT1G68810.1	197	65	3	101	291	161	352	61.42	1e-53	206
AfisC3G05545	AT3G25710.1	244	87	6	78	293	98	339	52.05	2e-53	206
AfisC3G05545	AT3G56770.1	170	85	3	106	271	37	204	46.47	8e-37	150

Ortholog group

Species	Genes
Allium cepa	g436456.t1
Allium fistulosum	AfisC3G05545
Allium sativum	Asa2G04517.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	116	162	41.8	6.7e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009506	C	plasmodesma
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009718	P	anthocyanin-containing compound biosynthetic process
GO:0009941	C	chloroplast envelope
GO:0010200	P	response to chitin
GO:0016036	P	cellular response to phosphate starvation
GO:0042538	P	hyperosmotic salinity response
GO:0080147	P	root hair cell development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network