result

Gene information

Detail information of AfisC3G05663

Location

Gene	Chr	Start	End	Strand
AfisC3G05663	chr3	1009352945	1009355599	+

Sequences

CDS

Protein

Gene

>AfisC3G05663
TACAGTAACTGAAGTCAATTCAGTCTCCAATCTCCATTAATAAACAAATTAATTCATTCAATCGCACCTAAAAATACTGCCACCAGTGTTCTTCTCTCTGCTTTCTTTCTCCTGCACAGCGTCTCCCTCTAATCCCATTCCATTCTTATTGCTGCTTTTGCTTAAATTATTATTTCTTTTAACCATGTATCCGTTCACTGAAATCCAGCTGAAAGAGCTAGAGTTGCAAACGATCATGTTCAATTATTTCGCGTCAGGAATTCCTATTCCTCATCATCTCATTTCGCTCTTCAATAGAGGCTTTTATGTTCTCATCGATCCTTTTGCACTCAACCCTAGTAAGTTTCTTTTCGTATTTCATTAATTAATACTGTAATTCTTCTCCTTTTTTGTTAGCTACAATCTGTCTGTTTTGGTAAATCCCCTTTAAAGTCATAAATGTTTTGGATTGGAATATGTTTATTAGGCTCTACAGTTAAATTCTGAATTTAGTGTTCTAAAAGTTTGAATATTTTTTGAGCAAACGAAGGTGTGATTTTTACATGTGGGATCAAATACTCGGGGTTCTTGATGTTTTAAATTGCTTCAGAAATTCAGTTTCTTGCTTCTTTTTCCTGTCTGATTTTTTGTTCTTTTGAAAAAAAAATGCACTCAAGTAATTTGAAATAATGTCAGTGTCATTTCTTAAAGAGAATGCACTGTCGCTGTTTCAAAAAAGATTAGTAGAAATGTTCCTTTCGTGCCATGCTGACAAGAGAGTAGTTTATGCTGTAAATATTTTTAGAAATTAGCTTAAAATAGTTATACAAATGAATACAAATCCATTTGTTTATTTGTTAATAATTTTCATTTTCAGAGAGTAATAAATTTAACTTTTGAAAAGTACTACAACACTCTGTCAATTATTGCATAATTTCGCCATGGTTAGAAGTTTAGAAAAAAATATTAGTCTATGTATATCAAATTAAAATATTATTTTCTTTCAATATTGGTAGAATCTAAAAACAAGGTACTGGGGTTTACTTATAAATATACTATATGTAATGTGGAAAATTTGTCTATGTGCTTATTTATCTGTATTTTTCGTTGAGTGGGCAAATTTTACTTTGTATCAATTAGTCTTGTTTTCTTTGAATTTATATAAAATAAGTATAACATATCATTTTATTTCCAAGTTTAAGGACCAAAAGGTTCATATATGAATGTAACTGTATATCCATGTCAGACCAAATTTCTTTGAAACCTGTAGAAACTATACAGCCATTAAGACTAATTGAATTCTCCTGTAAACTTTTGCAACAAATTATCCGTTTTCTATATATATGATGAAAAAGCTACATTGTTTAATTTGGATTGTCCGAAACGAAGTGCAATTATGTTACCTTTAGTTGAAGAAAATAATAATTATACTTGAATTAATATAGATAGCGATAAATAAAATGAACCGAACTAGGATTTCAATTCTATTAAAATATAAAATTATTACTATTAAACATCTGCTTGGTTAATTAAATTATTGCGAATTTTTTATACATACCGATTCATCATATATCAGAGGGGTTGCCCTTAGTGGTGGGTTGCCCTAGACAATTAGCTTGTTTGTCTACCCTACTGCCGCCCCTAGTAAGTAACTAGTGTTGCTAATATTTTGTATTCTATAAGCATATGTAATAAGCCAATATCTAACAGTAAGAAGACATGACTTGGGATTGTATTTACCTATGTAGTATATATGGCCCATTATTTGTTTTGCTTTTTATATCTTTCTTTTATTGCTTGTAAACTTATAACAAGCAATTAGCAATTAGTCGCATGATTATAGCCGATAATCCTACTTAAAACATTATATTGACTAAAATCATCCAACAACTTAACATCTCGAATGCATGAAAACATGGCACTGTATCGACTAAAAGTAATTTGTATGGACATAGGATTGGTTTCCATTATATAACACAAAATGTGTCAAATGATGTTAATAGTGAATGCAACAAAGAAAGTAGAAGAAGATCCAGAGCCATGGAGGTGCAAAAGAACAGATGGAAAGAAATGGAGATGCTCGAAAGAAGCAAGCAAAGACTCCAAATATTGCGAAAGACACATGCATCGAGGAAGGAGAAGTTCAAGAAAGCTAGTGGAAATGCATTCTCCTCTTTCCACCCAAAGGCCTAACTTTATCAATCAGTTCTCGAACCCGAACATCATGCTTCGCCTGTATGAAGAAAATAAGCATGGTTATGTGGTTGATACAGAGCTTAAGCTTGGCAATGGTGATGGTGGATCGGAGAAGGAGAAAGAGGAGAGGAAGCCGAGTACTTTGCTTCGATTGTTTGATGAATGTGTCAATGCTGAAGATAGTTACTCGTTGTCGATTTCCTTCCCTTGAGTTTGTATTTGTGTTGGGGAAATAGTATTATAAGTGTTGTTGTAATTCTGATCTTGTACATATTTTGCACCATGTATCAATGTATGAGTTTCTAACTTGTGAAATCTTTGATGATTGGATGTTCATGGTTGAAGACATGTTTGAGTCCTATAAAGACAGCTTTGCTTATATGCTACTCTTTGAAGATTACGTTATGGTTGAATACGGACCTGTTACCCATGCGAATGATGTATAACATTCAAGAAAGCAAGATGGTCATGAAAGCAAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255192.1	7.9e-27	growth-regulating factor 1-like
Swissprot	Q6AWY6.2	2.9e-18	Transcription activator GRF3
trEMBL	A0A5P1FEJ7	5.7e-27	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G53660.1	48.54	5e-23	103	AtGRF7;GRF7	growth-regulating factor 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05663	AT5G53660.1	103	43	2	2	104	58	150	48.54	5e-23	103
AfisC3G05663	AT2G06200.1	117	42	2	3	101	6	122	48.72	4e-22	100
AfisC3G05663	AT3G13960.1	131	64	2	3	124	16	144	42.75	1e-21	99.8

Ortholog group

Species	Genes
Allium cepa	g480885.t1
Allium fistulosum	AfisC3G05663
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	3	33	27.5	1.7e-06
PF08879.7	WRC	Domain	62	104	68.6	2.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005509	F	calcium ion binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0008285	P	negative regulation of cell proliferation
GO:0009267	P	cellular response to starvation
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010114	P	response to red light
GO:0010218	P	response to far red light
GO:0019222	P	regulation of metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048366	P	leaf development
GO:0048528	P	post-embryonic root development
GO:0061062	P	regulation of nematode larval development
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network