Detail information of AfisC3G05732


Location
GeneChrStartEndStrand
AfisC3G05732chr310206986031020705278-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPKU70791.12.6e-197PHD finger protein MALE MEIOCYTE DEATH 1
SwissprotQ7X6Y7.11.8e-142PHD finger protein MALE MEIOCYTE DEATH 1
trEMBLA0A2I0W5591.9e-197PHD finger protein MALE MEIOCYTE DEATH 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G66170.139.712e-142 503MMD1RING/FYVE/PHD zinc finger superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag240921.t1
Allium fistulosumAfisC3G05732
Allium sativumAsa2G00094.1
Arabidopsis thalianaAT1G66170.1; AT2G01810.1
Oryza sativaLOC_Os03g50780.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain59063536.53e-09

Gene Ontology
AccessionOntologyName
GO:0000212Pmeiotic spindle organization
GO:0000975Fregulatory region DNA binding
GO:0042393Fhistone binding
GO:0005719Cnuclear euchromatin
GO:0006355Pregulation of transcription, DNA-templated
GO:0007060Pmale meiosis chromosome segregation
GO:0009653Panatomical structure morphogenesis
GO:0010032Pmeiotic chromosome condensation
GO:0033613Factivating transcription factor binding
GO:0043565Fsequence-specific DNA binding
GO:0048235Ppollen sperm cell differentiation
GO:1990188Feuchromatin binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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