result

Gene information

Detail information of AfisC3G05733

Location

Gene	Chr	Start	End	Strand
AfisC3G05733	chr3	1021030640	1021032180	+

Sequences

CDS

Protein

Gene

>AfisC3G05733
ATTGTCACACCCCAACTTCCTTATCAAACCTTAACTACTCTTCCTAATCTTCCCTAAACTAATTCTTCCAATATTGTATTCAAAATTCGTACAAGTCTTGATAAAAAGGATAATTTAAGAAAATAGTTTATAGTACTCATGTACATTGAGTAAACCTCGTGTAGTAAATAAAACCACACGAGCAAAATCCACCTCACCTTCTCTTTCTCTTCCTCAAGCCGTCCCTCTCTTACACTCACTCGCATATTTAACCTCCGGTGACCACACCGCCCACTACTTCTCAGCAACAACCTTCACTGTTATAAACCCCTCCAAAATTTTCTTTCAACTTATCTTCTCCCATTTCAAATTTTTTATCGTTCAAACCAATGGCAGCTGTTAAACAAAGAAGACTCAAACTCAATCTCCAACTTCCAGAACCCGACCATCTCCTCCGCTTCCCATTACCTCCACTCCATCCATCCACCACCGTCACGTCCACCTCCGCCGCCACCGCCGACTTCAAACTCTCCGACTTCGAAAAGATCAAAGTCCTCGGCCACGGAAACGGAGGCACCGTCCACAAGCTCCGCCACCGACGAACCTCCAACATCTACGCATTGAAGGTCCTACACTCCGATTCCGTCTCCTCAAAACGCGAAATCCAGATCCACCGCGCCACTGACTCCACCTCCGTTGTCAAATGTCTCGCAGTCCTCCACACCAACTCCGGTGATCCTGCTCTTCTTCTAGAGTACATGGATCTAGGCAGCCTTGATCGGAACATCACCTTTCCCGAACCAGCTCTTTCCGAAATCGCATATCAGGTCTTGAACGGGTTATCATACCTTCACTCTCAGCAAATCGTCCATCGCGACATCAAACCTTCCAATTTGCTGATCAAAAGTACGAATACTGAAATCAAAATCGCTGACTTTGGGGTAGCGAAAGTAATGAGGCGGAATCTAGATCCGTGCCTATCGTACGTAGGCACGTGTGCGTATATGAGTCCGGAGAGGTTCGATCCGGACAAATATGGAGGAAATTACGATATCTACGCGGGTGATGTGTGGAGTTTAGGGTTGACGATTTTGGAGCTGTATTTGGGGCATTTCCCGCTTTTGGCGGTTGGACAGAGACCTGATTGGGCTACGTTGATGTGCGCGATCTGTTTCGGAGAGGATCCAGTGGTGCCAGAAATGGCGTCCGAGGAGTTTAAAGATTTTATAGGGTGTTGTTTGCAAAAAGATGCGAAGAAGAGGATGACGGTGTCGGAGTTGTTGAATCATCCTTTTGTGGCGGAAAGAGACGTGGTTGAGTCGAAAATGGCATTGAGGAAGACTGTGATGAGATGAGTGCGGGAGTTTTCTGTTGTATATAGTCCTACGGTCTTACTTAATCCAGCATCACCAAAAGAGGATGCCGTGCTATGCGTTAGAAATGAACTATTATGCATTTTTTGACACTATTGTGCGTTACTTTTACTGTTCAAAATTAATCTTAATAAGTTTGACAATTTTTTTATAATTTTGTGTTAGCGTTGCTGAACATTGTTCAATTGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257236.1	2.2e-109	LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase 9-like
Swissprot	Q9FX43.1	4.5e-83	Mitogen-activated protein kinase kinase 9
trEMBL	A0A2I0WJ39	2.1e-106	Mitogen-activated protein kinase kinase 5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G18350.1	50.64	3e-83	305	ATMKK7;BUD1;MKK7;MKK7	MAP kinase kinase 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05733	AT1G18350.1	312	140	7	1	305	1	305	50.64	3e-83	305
AfisC3G05733	AT1G73500.1	319	125	7	1	305	1	308	52.98	4e-82	301
AfisC3G05733	AT3G21220.1	273	123	6	36	303	59	325	50.92	4e-73	271

Ortholog group

Species	Genes
Allium cepa	g27337.t1
Allium fistulosum	AfisC3G05733
Allium sativum	Asa2G00088.1
Arabidopsis thaliana	AT1G18350.1; AT1G32320.1; AT1G73500.1
Oryza sativa	LOC_Os02g46760.1; LOC_Os03g12390.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	50	303	196.8	3.8e-58

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0000187	P	activation of MAPK activity
GO:0005515	F	protein binding
GO:0000747	P	conjugation with cellular fusion
GO:0001818	P	negative regulation of cytokine production
GO:0002218	P	activation of innate immune response
GO:0002229	P	defense response to oomycetes
GO:0002252	P	immune effector process
GO:0004702	F	receptor signaling protein serine/threonine kinase activity
GO:0004708	F	MAP kinase kinase activity
GO:0005634	C	nucleus
GO:0005856	C	cytoskeleton
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0007112	P	male meiosis cytokinesis
GO:0043066	P	negative regulation of apoptotic process
GO:0009524	C	phragmoplast
GO:0009570	C	chloroplast stroma
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009682	P	induced systemic resistance
GO:0009693	P	ethylene biosynthetic process
GO:0009862	P	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0009926	P	auxin polar transport
GO:0010120	P	camalexin biosynthetic process
GO:0010150	P	leaf senescence
GO:0010227	P	floral organ abscission
GO:0010229	P	inflorescence development
GO:0010311	P	lateral root formation
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0022603	P	regulation of anatomical structure morphogenesis
GO:0030295	F	protein kinase activator activity
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0043167	F	ion binding
GO:0044092	P	negative regulation of molecular function
GO:0046777	P	protein autophosphorylation
GO:0048585	P	negative regulation of response to stimulus
GO:0051248	P	negative regulation of protein metabolic process
GO:0072359	P	circulatory system development
GO:2000037	P	regulation of stomatal complex patterning
GO:2000038	P	regulation of stomatal complex development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20604	MKK9; mitogen-activated protein kinase kinase 9	EC:2.7.12.2	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network