result

Gene information

Detail information of AfisC3G05992

Location

Gene	Chr	Start	End	Strand
AfisC3G05992	chr3	1061284840	1061286852	+

Sequences

CDS

Protein

Gene

>AfisC3G05992
GAGAAGCAGAGAGGCCTACAACGCATCAGCAAATCATCTCCATTCACGCAGATCGCTAACGTGGCTGTATAATCTTCGTTCCCGCCTAAAAATCTATCCATGCTCGCATATCATCCGTCCGTTCTGAAATGGAGGAAATGATATCAATACCTACAACACCCCTATTTCTCCCTTCTTATATCGCCCTTTTTCCCCAATTCCAAATCAAATTACGCTGAAATATCAGAAACAAGGTATTATTAATGGAGTCTTCATCGATTTATGTTTCTGTTTAGCGAATTCTTATGATTTAATTTTTTTTGATTCTGTAGATGGGTAGAGCAAAGGCTGATGCATCGAAAAAAGGAGATTCGAAGTGAGTTCGTTACTATTTTAATTAATTTTGGGGATTTTTTTTAGATCTGTTTCGTTTCCGATTTCAGATCTAGGTTTTGATTTGTAATTTCTCTGATTATGCAGGGTCTCCGTGAAAAGGAAGGCGGCTGAAAAGCCAAAGAAGCAGCCGGTGAAAAAGGCCAAGGCTGAGAAGGATCCCAACAAGCCTAAAAGGCCCCCTAGCGCCTTCTTTGTTTTCATGTAATTTTCCTTTATCCTTGTTTTATTATGTTTTTTGATTGTTTGTCTTAGGGTTTTTGAATCTGTGAAATTTTAGGGAGGAATTTAGGAAGCAATTTAAAGCGGAGAATCCTGACAATAAGCAAGTTTCAGCTGTGAGTGGTTATGATTCATTTGTTTGGTATCTTGGTTGAATTTTAATTTCCGATTAGTTAGAGCTCTTTGTTTGGTGAATTAGGTCGGTAAAGCAGCGGGCGAGAAGTGGAAATCTATGTCAGCTGCTGTGAGTTATATTTTTGACAGAGTAATCCGTATAATATTAGGAAATTTAATCTTTAGATCTAGAATTTTAATTTATTAATTTACAGGATAAAGCACCTTACGAGGCAAAGGCAGCGAAGAAGAAGACCGAGTATAACAAAACCATGGTCGCTTACAACAAAACTCTGGTATGAATACCGTGCTACTGAAGTTACATCACTCTACATCTTTTGTGCCTTTGTCAACTGAACGATTAACAATAAACTATTTGTGTTTAGTCTGATGGAGCAAGCAAAAAAGCTGTAGTTGAAAAGGAAGAGGAGGAGGAGGAATCTGATAAATCCAAATCCGAGGTTCATGACGAGGACGACGATGAAGATGATGAAAGTGGAGAGGTAATACTCTAAATTCAGAGGACAAATATATTTATCACTATTTATGGCTCAAATTGTAATCCGTGTTTTCTTTTTCAGGAAGAGGAGGACGATGATTAAGTAAGAACGGCGACTTGACAACGATTTCTATCTCTGTTTTAGAAACATGGCTACATACTAGCCTTTGATCATGTCAATGAATGTACTTAACTTTGTTTTATGTATGTGAAATAGTTTGCTTTCGTAATAGATCCTGTTCTCTTAACCTAAATTGTTCTTTAGTAACTGTGTTAGTTTTTGCAACTTATAAATATCGTGATATTTTGGAGAATGCCTTTGAATTGTTTAATCATGTAGTTGAATACCCATTATTTGCTGTGGTCAGATTTGCGGCGCGTCACGCAAAGGATGCAATTCGGTATAGATGTTTTGAAGTTTGCTTGTCATATTCGACGTTTTCTTCTCTTTTGTACATTTAATGGACTTGCAGTGAAGCTAAACCACACATAAAAAGAAGCATTGCGAATTAAGTGCAATTTTTTGTCTAATTTTTATTGGGCCGGCAGTGAAGTTATATACCACACGCATCAAAAGAAGCATTTTTGTACAATTTATTCGTTGGGTGTTGAATTATGATTTAGATGGGAATAATGTTTTTATACTTCATGTTGGAGCGGAACTAAAATGCGAATGGTCCCATTGCTATTTTGATTTGATTGGCCTGTACGATGCCACTTCGTGATCATGTTTTATGTGCACGTTAAGCTGGCGATTTAATGTTAGTTTTTTCCTGCATGGACCCGAGTGCATGTATAAAGTGTGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248415.1	1.8e-27	HMG1/2-like protein
Swissprot	P26585.1	1.3e-22	Protein SB11
trEMBL	D6MKP4	9.5e-31	Transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20693.2	58.22	1e-34	142	HMG BETA 1;HMGB2;NFD02;NFD2	high mobility group B2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05992	AT1G20693.2	146	45	3	14	159	13	142	58.22	1e-34	142
AfisC3G05992	AT3G51880.2	135	43	2	13	146	22	144	58.52	2e-34	141
AfisC3G05992	AT3G51880.3	135	43	2	13	146	22	144	58.52	3e-34	140

Ortholog group

Species	Genes
Allium cepa	g292060.t1; g53385.t1
Allium fistulosum	AfisC3G05992
Allium sativum	Asa2G04975.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	43	112	83.6	8.7e-24

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000401	F	open form four-way junction DNA binding
GO:0000402	F	crossed form four-way junction DNA binding
GO:0000405	F	bubble DNA binding
GO:0000723	P	telomere maintenance
GO:0000784	C	nuclear chromosome, telomeric region
GO:0000790	C	nuclear chromatin
GO:0001934	P	positive regulation of protein phosphorylation
GO:0002053	P	positive regulation of mesenchymal cell proliferation
GO:0002755	P	MyD88-dependent toll-like receptor signaling pathway
GO:0003681	F	bent DNA binding
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0003714	F	transcription corepressor activity
GO:0006334	P	nucleosome assembly
GO:0005829	C	cytosol
GO:0005125	F	cytokine activity
GO:0005730	C	nucleolus
GO:0006978	P	DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0008134	F	transcription factor binding
GO:0010596	P	negative regulation of endothelial cell migration
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016605	C	PML body
GO:0019221	P	cytokine-mediated signaling pathway
GO:0019900	F	kinase binding
GO:0030335	P	positive regulation of cell migration
GO:0030527	F	structural constituent of chromatin
GO:0030870	C	Mre11 complex
GO:0031175	P	neuron projection development
GO:0032392	P	DNA geometric change
GO:0032526	P	response to retinoic acid
GO:0032732	P	positive regulation of interleukin-1 production
GO:0032755	P	positive regulation of interleukin-6 production
GO:0032757	P	positive regulation of interleukin-8 production
GO:0032760	P	positive regulation of tumor necrosis factor production
GO:0032897	P	negative regulation of viral transcription
GO:0034123	P	positive regulation of toll-like receptor signaling pathway
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0034340	P	response to type I interferon
GO:0034341	P	response to interferon-gamma
GO:0034399	C	nuclear periphery
GO:0042803	F	protein homodimerization activity
GO:0043392	P	negative regulation of DNA binding
GO:0043433	P	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044378	F	non-sequence-specific DNA binding, bending
GO:0044710	P	single-organism metabolic process
GO:0045765	P	regulation of angiogenesis
GO:0045931	P	positive regulation of mitotic cell cycle
GO:0046826	P	negative regulation of protein export from nucleus
GO:0050663	P	cytokine secretion
GO:0050786	F	RAGE receptor binding
GO:0050790	P	regulation of catalytic activity
GO:0050930	P	induction of positive chemotaxis
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051103	P	DNA ligation involved in DNA repair
GO:0051106	P	positive regulation of DNA ligation
GO:0070087	F	chromo shadow domain binding
GO:0071642	P	positive regulation of macrophage inflammatory protein 1 alpha production
GO:0097100	F	supercoiled DNA binding
GO:1901224	P	positive regulation of NIK/NF-kappaB signaling
GO:1902041	P	regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902044	P	regulation of Fas signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network