result

Gene information

Detail information of AfisC3G05994

Location

Gene	Chr	Start	End	Strand
AfisC3G05994	chr3	1061826771	1061828621	-

Sequences

CDS

Protein

Gene

>AfisC3G05994
TGATATTGAAAATTGAGGCTAGCGACTTTTCTACAAATACACAAAATATACTAGCCTCAATTTTCGATTTCTTTGTGTGTATAAATGGCAACAATGAGCCTACCTCCTGGTTTCAGGTTTCATCCTACGGATGAAGAGCTTGTTGCATATTATCTTAAAAGGAAGATCAACAGGAGAAAAATTGAGTTGGAAGTAATTCAAGAAGTAGACCTCTATAAGTGTGAGCCATGGGAATTACCAGGTAAACTAGATATATATCTTGAATTTATTTTACTTATTGTATCATATTATATCTATATTTTACATTGTTTGTCAAAACAAAACAAAAAGTTAATGGATAACCAATCACATATGCTAGTTTATGTCTGAAACATCTTGGTAAAGAATTAAGTTTGTAAGTATAGCAAATTAATCCCCAAAAAAATAAAAATAAATAAATAAATAATCTGCACACATCTACTATTGGTTTGCAGTTTGTAATAATTATCCAATTTTGTTAGAAGAAGCGTTCCAAACCTAACAGTATTCCAACACATGTTATCTTGTAATCAAGAGTATATAGAAACTAAATAAATATATTGATGCAGAAAAATCGTTCTTGCCAAGTAAAGATTTAGAGTGGTTCTTCTTCAGTCCTAGAGACCGAAAGTACCCCAATGGGTCAAGAACAAACCGGGCAACACAAGCTGGGTATTGGAAGGCTACCGGTAAGGATAGAAAAGTGTATTCCCAAAAAAGAAGCATTGGTACAAAGAAAACGCTAGTTTACTACAGAGGAAGAGCACCACACGGCTCAAGAACGGATTGGATAATGCATGAGTATCAACTTGATGAAAGCGAGTGTGAAACCCCCAGCTCCGGTTTACAGGTAAACTACCATGTTGGAGAAATTCTATCAAATGTCCTTTCTTAACTATTAGCATTTAAGACTAACATCGATGTTTTTCGATGCTTTGACCAGATAATGTCTTTTGGCATAAATTTTACATTATGTCTTTAATGTAACAAGTAATGTTTTTTCTAGGATGTGTATGCTTTGTGCCGCGTATGTAAGAGAAATGCACCGGGGCCTGTTATCATAGCAGAAAAATCAAATAGCTATTCATTACAGTATGAATCAAACTCCTCGCGGATAATCCAAAAACCTATGAATTGTGTAGAAGGAAAGTGGATGCAGTTCCTAGACGAAGATGCATTTGATGCTAATGTTTCTCCTTTTCAAGATAGTTCCAGCTGTTTTCCTTATGTGCCATCTGAGGTATAATTTAGAACGAAGTTTCTATTGAGAATATCGATTTAACTAGATGCAAAATTGTTTCTTATTCATTTGCTGCAAGGAAAATCATCTTTTTGCAAAATTTAACATAAATTTTGTGGAAAACACTGAAGATAAGAAGAAAAAATAAATGAAATATACTGATAGTTAGTGGCTCATATAAGTTAAGTTGCTTAACAAAATTGATACCGAAATAACAAGCTACACTACAAACATTTCATTTCCAGCTAATAATATTACATTTATTCATGTAATATTTCTGTTGAATGATGCAGGTGGATGTGCTTGCACTAGAATGGACAAAGGATATGGAACCATTTGATCTGCAAGGTGCAAAAATGTTTCATTCGGAGTACGTTCAACAAAATACAACAGAGGATGACATGAATAATACTTTTAGGCATGATGATAACTTGTTGAATGGGAACATCAATACACATTTTGAAGAATTCACCTCACTATTGGAAACAAAACATGAAGGAGTTGATGATGAGTTGTTTAGCATGATGGATTGCTTGGATTCTACTAGTTTTTTGGAGGCCATAAACTCTGAAGGTAATTTGAGGGATGACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248886.1	1.1e-95	NAC domain-containing protein 86-like isoform X1
Swissprot	A4VCM0.1	3.6e-72	NAC domain-containing protein 45
trEMBL	A0A5P1E0H8	7.7e-96	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G65910.1	52.32	2e-79	293	anac028;NAC028	NAC domain containing protein 28

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05994	AT1G65910.1	302	94	8	1	259	1	295	52.32	2e-79	293
AfisC3G05994	AT5G17260.1	157	34	0	1	157	1	157	78.34	1e-74	276
AfisC3G05994	AT3G03200.1	157	34	0	1	157	1	157	78.34	2e-74	275

Ortholog group

Species	Genes
Allium cepa	g292120.t1
Allium fistulosum	AfisC3G05994
Allium sativum	Asa2G04977.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	7	133	101.1	4.3e-29

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003002	P	regionalization
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005829	C	cytosol
GO:0005682	C	U5 snRNP
GO:0005685	C	U1 snRNP
GO:0005686	C	U2 snRNP
GO:0005687	C	U4 snRNP
GO:0005730	C	nucleolus
GO:0005732	C	small nucleolar ribonucleoprotein complex
GO:0005789	C	endoplasmic reticulum membrane
GO:0008283	P	cell proliferation
GO:0009555	P	pollen development
GO:0009819	P	drought recovery
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009741	P	response to brassinosteroid
GO:0010114	P	response to red light
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010455	P	positive regulation of cell fate commitment
GO:0015030	C	Cajal body
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031930	P	mitochondria-nucleus signaling pathway
GO:0042803	F	protein homodimerization activity
GO:0045491	P	xylan metabolic process
GO:0046540	C	U4/U6 x U5 tri-snRNP complex
GO:0046982	F	protein heterodimerization activity
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0070301	P	cellular response to hydrogen peroxide
GO:0071004	C	U2-type prespliceosome
GO:0071013	C	catalytic step 2 spliceosome
GO:0071365	P	cellular response to auxin stimulus
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090059	P	protoxylem development
GO:0090602	P	sieve element enucleation
GO:1900409	P	positive regulation of cellular response to oxidative stress
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1990110	P	callus formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network