result

Gene information

Detail information of AfisC3G06182

Location

Gene	Chr	Start	End	Strand
AfisC3G06182	chr3	1099963335	1099965485	-

Sequences

CDS

Protein

Gene

>AfisC3G06182
CACATTTCTTTCTTGCAAATGCACTAGCTAGTGTGTATATCTTCCTTTTTCCTCCCTTTTTAGGGTTTCTAAGATTGAGCTAGCATCTTTCCTTTTCATATAAATAAAATTAGGTTTGTCCAGTTTGGGAATCAAGAAAAATCAAAAGTTGGCTTTCAAGACTATATATGTTAGCTAGATCTGAGCAGTTGTTTCTTGAGCTTCTTTTATGCTAAGTTTTGACTGGTTCCATCAATCTATGCTGTTCCAAGTAAGTATAATGATTAATTTTGATATAATGATACTGATTTAATTCTCTTCAAAATCTCTTAAGAAAGTAAACTGTTGGGAACCTTTTGTTTCTTTTTTTCTTTTCTTTTTCTTTCATTTTGCTATTTTTTTTGTATTTGAATCATGACTTTTGATAATTTTTCATTCTTGATTTAGGCGTCTTAGATACACTTGAAGAATATCTGTTCATAAAAATGAATTATGTATTGTTAATATATTTATTTTTATGACAAGAGATCTCATTTGATCTATAATTTTGTGGCCAAATATTATCTTTGCTGCTGTTGTAGTATATTTTCTTCTACTTTCACCTTAATAAGGCTGGTAATATCACTGGATGTTATTATACGTATTTCATTATTTCAAATTTTACATTTGCATAAAATCTGTTAGAATAATATTGCAGAGGATTGCTCAATTTATTTTTTGATTTTTAGTACCATATATAATCATACACATAATTTACATGAAATTATAATTTGATACTGATATACACTTAAAAGAATTACCATGTAATAAATTTGTGTTACAATATTTAAAAAATCATAATCATAATTAACAATTAGATTTTTACTTATCAATTTTTTGGTTATTCAACTCCTAAACGGATTGTTTTCTTAAGTTGACTGGCTGCTTAGGAGTAAAATCCACATCTTTCAGATTACACAATCAAATACCTTACTATTATTGGTTCATAACTCTAGTTAATTACATTTTCAGTCAGTTCATATGTACAACTGCATGCTTTATTTAACCCAAAAAGTGGTTGCATTGGAAGATGACAAACCCGAGTGATTAAGAGTTTGAATTGCCATGGCGTAACTCCCTTACATAGTTATCAGCATTGTGTGTATCCAGTTTATCTGGGTAAAAAAAAAAAAAAAAAAAATTCTTCTTTTGAGCTTGACTATTATTTATGTTTGATTCAAAAGTTTTTGGTTAACACAATCAACTATTTTACCACTAGAACCCCAATAATAGTTAATAGGTTTTAGTAACTCTATTCAAAATTCTTCATCTCGACTAATGAAATATTGCATACACATGCACTCAAGAATCAAGATATGATAAGGAATGAAAGAGAAAAAGCCCTTCAAGATTCAAAACAACAAGTTACTACAATCAGGAACCATGAAAAACCTCCCATAACCACTAGTACAAATTCAAGATCATGGTCAGGAGCACTAAAGAACCCAAGAATCGTAAGAGTATCACGAGCATTCGGAGGCAAAGACCGGCACAGCAAAGTGACAACAATAAAAGGACTAAGAGACCGAAGAGTGCGCCTCTCCGTGCCCACAGCTATTCAGCTATACGACCTCCAAGACAGGCTCGGCCTTAACCAACCTAGCAAAGTCATTGACTGGTTGATCAATGCTGCTCAGTCTGAAATCGACAAACTTCCTCCTCTCCATTTTCCACCAGAAGATCACGGTCTAATGGCTCAAATGGTTCCTACTCCCAGATCAGAAGAGCCAAAACCTGACACTAATGTACAAGCTTTATCACATGATCAAAATATGGCTTCCTATGCTACTTACTATCAATGGGAAGGGGCAAATGCGTACTTGTCCCAGCCCATTATGTCAATTCCTTACTTTTGTCCACCATCGATATTTGGTTCTACTGCAGTAAGTGTTACTCATGTGCAGGCGAATTTGGAGATGAACTCTTTTGATCATCTAAGTGGCACTTTGGGAAGAGAGTTTGAGTAAATTGTACTTTACATGATTTCCTAAGTAGTTTGAGTAATAATTAGTTTATTTGAACCATATGAGTGAAACAAGATTTTATTACTTAGGACATTAAATTTGTGTATTGCAAGTTTGCAACTGTAAGGTGTAAATGTATATGTGGCGTGAATGGTTTTCAGTATTATAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275825.1	2.1e-40	transcription factor TCP13-like
Swissprot	Q9FME3.1	5.6e-35	Transcription factor TCP5
trEMBL	A0A5P1EJ63	1.5e-40	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G60970.1	74.74	1e-37	153	TCP5	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06182	AT5G60970.1	95	20	2	54	148	45	135	74.74	1e-37	153
AfisC3G06182	AT3G02150.2	99	29	1	41	139	44	141	69.70	3e-34	141
AfisC3G06182	AT3G02150.1	103	33	1	41	143	44	145	66.99	6e-34	140

Ortholog group

Species	Genes
Allium cepa	g513773.t1
Allium fistulosum	AfisC3G06182
Allium sativum	Asa2G05092.1
Arabidopsis thaliana	AT5G08070.1; AT5G60970.1
Oryza sativa	LOC_Os01g55750.1; LOC_Os01g55750.2; LOC_Os01g55750.3; LOC_Os05g43760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	72	134	95.8	3.4e-27

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008285	P	negative regulation of cell proliferation
GO:0009507	C	chloroplast
GO:0009637	P	response to blue light
GO:0009733	P	response to auxin
GO:0009793	P	embryo development ending in seed dormancy
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0030154	P	cell differentiation
GO:0031347	P	regulation of defense response
GO:0045962	P	positive regulation of development, heterochronic
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network