result

Gene information

Detail information of AfisC3G06196

Location

Gene	Chr	Start	End	Strand
AfisC3G06196	chr3	1101509775	1101511740	+

Sequences

CDS

>AfisC3G06196
ATGGAAATGTCCAAAAATGGGAAAGATGAATCACGGCTTCTAATAATAATATCACTGATGATCACCATCTCAGCTATGCTAGTTGACAGTAGCGATAGTGAAGTTGGGCAGGCGTGGAGCATCACTGCAGCAGAAGAAGCAGAAAGAGTAGCTGCTATCAACTGTTCTGGTCATGGCAAAGCTTTTATAGATGGAGTAGTCATAAATGGAATAACCCAGTGCGAGTGCAATACTTGTTATACCGGTTCTGATTGCTCTGAACATTTACCAAACTGCGCTGCTGATGCAGCTGCTGGAGATGCAATGTTTCTGGAAGACTACTGGGTGAACCAGAAAGCGAGCAGTGCAATACTAATATCAGGATGGAGCAGAATGAGCTATTATGCTAGTGGACCAGACTATACCTCTATCGAGCTTGAAAAGTATATTAAACGCCTGCATAATGCTGTCGGTAATGCTGTAGTTGATGACAAGTACGTCGTGTTTGGCAACGGTGTCACACAGCTTATCAACTCATTTGTTCGTGCACTTTCACGCCCTAAACCTTCTGCACTTACTCCTAGGACACTAAATGTTGTTGCTCGAGCTCCTTATTATCCGGTTTTCAGGGAACAAACAAAGGCTTTCGATTCCAAGCACTATCAATGGAAGGGAAATGCAAGGAGTTATGTAAACACAACGACACCTGAAGACTTCATAGAGTTTGTGACATCACCAAATAATCCAGATGGCCACTTTAGCCAATCAGTAATCAATGGCTCTTTGACCATCAATGATAACGTTTGCTACTGGCCTCATTATACACCTATCACGGAACCCCTCGATGAAGATATAATGATGTTTTCTATGTCTAAGCTCACTGGACACACTGGTAGTCGATTAGGGTGGGCGCTAGTGAGAGATTATAAGGTACAACAAGCAGTTGCACATGAGTACATGGCATTGGGCAGTGAGGGGAGTTCTCATGATGCGCAACAACGTGCTCTCATACTTTTAAAAGATATTGTAAAGAATATAGAGACAGAGGAAGATGACCACAGAAATGACATCTCATTATATGGTTATAGTGTGATGATGTCAAGATGGGATCAACTCGAAGATGTAATATCAAGAACACATCGCTTCTCTCTTCAAAGCCGCCCTCGTCGTTTCTGCAATTATATGAAAATATATAGACGCCTTACTCCAGGTTTTGCATGGCTAAAGTGCAACTATGAACATGAGACGGACTGTGAAAAAGTACTTATAAGAGGAGGAATCAAAAGTGAAGGAGGTGAAGAATTTGAGGCAGACCCACGTTATGCACGCTTGAGTTTAATCAAGACAAAAGATGATTTTGAGCAGTTGATTGAGAAGCTGAGAATTCTGGTTACTGAAAATGGACTCGGTACTTCAATATGA

Protein

Gene

>AfisC3G06196
ATGGAAATGTCCAAAAATGGGAAAGATGAATCACGGCTTCTAATAATAATATCACTGATGATCACCATCTCAGCTATGCTAGTTGACAGTAGCGATAGTGAAGTTGGGCAGGCGTGGAGCATCACTGCAGCAGAAGAAGCAGAAAGAGTAGCTGCTATCAACTGTTCTGGTCATGGCAAAGCTTTTATAGATGGAGTAGTCATAAATGGAATAACCCAGTGCGAGTGCAATACTTGTTATACCGGTTCTGATTGCTCTGAACATTTACCAAACTGCGCTGCTGATGCAGCTGCGTATGTTCAACTTTCATCTTTCAACTTTACATAACACACACACTCTGATATATATATTGCATGCATAAGATGATATATTTCTGTTATACAAACTTCATTTGAATTATATTTTTGAATACAGTGGAGATGCAATGTTTCTGGAAGACTACTGGGTGAACCAGAAAGCGAGCAGTGCAATACTAATATCAGGATGGAGCAGAATGAGCTATTATGCTAGTGGACCAGACTATACCTCTATCGAGCTTGAAAAGTATATTAAACGCCTGCATAATGCTGTCGGTAATGCTGTAGTTGATGACAAGTACGTCGTGTTTGGCAACGGTGTCACACAGCTTATCAACTCATTTGTTCGTGCACTTTCACGCCCTAAACCTTCTGCACTTACTCCTAGGACACTAAATGTTGTTGCTCGAGCTCCTTATTATCCGGTAACTATATATAGTTACTCATACAAGACGACCATAATTAACATGCATAAAAAATACAAACACAATGTGTGAAATTCATATAAATTACCTACTCTAATCAGGATCATTAAGATCAATTGATGTAAAGTTGCCAAAACAAAACTAACCGATTTGGACAGATATATAGATCTTTTATTCAACAGGATCTTGTATCACAATTCAAATATAGTTATGTTTGATAAAATACTGTCTATAGACACTTATCTTACTGTAAAACTACAATAAACACATGCAGGTTTTCAGGGAACAAACAAAGGCTTTCGATTCCAAGCACTATCAATGGAAGGGAAATGCAAGGAGTTATGTAAACACAACGACACCTGAAGACTTCATAGAGTTTGTGACATCACCAAATAATCCAGATGGCCACTTTAGCCAATCAGTAATCAATGGCTCTTTGACCATCAATGATAACGTTTGCTACTGGCCTCATTATACACCTATCACGGAACCCCTCGATGAAGATATAATGATGTTTTCTATGTCTAAGCTCACTGGACACACTGGTAGTCGATTAGGGTATGTTTATTTATTGTTATCTTACACACACACACACACAATAACAGTGCAATAATGCATCGCATAATATATTTTTGTTATTTAGGTGGGCGCTAGTGAGAGATTATAAGGTACAACAAGCAGTTGCACATGAGTACATGGCATTGGGCAGTGAGGGGAGTTCTCATGATGCGCAACAACGTGCTCTCATACTTTTAAAAGATATTGTAAAGAATATAGAGACAGAGGAAGATGACCACAGAAATGACATCTCATTATATGGTTATAGTGTGATGATGTCAAGATGGGATCAACTCGAAGATGTAATATCAAGAACACATCGCTTCTCTCTTCAAAGCCGCCCTCGTCGTTTCTGCAATTATATGAAAATATATAGACGCCTTACTCCAGGTACAAAATGCATCTTTGTTTTTAATTCTAAAAGCAGCTTAGAATAATAAATGACTATGTATATGTGCCTTTGAATAAATGGCAGGTTTTGCATGGCTAAAGTGCAACTATGAACATGAGACGGACTGTGAAAAAGTACTTATAAGAGGAGGAATCAAAAGTGAAGGAGGTGAAGAATTTGAGGCAGACCCACGTTATGCACGCTTGAGTTTAATCAAGACAAAAGATGATTTTGAGCAGTTGATTGAGAAGCTGAGAATTCTGGTTACTGAAAATGGACTCGGTACTTCAATATGA

Functional annotation

Database	accession number	e-value	annotation
nr	AZG03003.1	5.2e-128	alliinase
Swissprot	P31757.2	2.1e-126	Cysteine sulphoxide lyase
trEMBL	A0A3G8G7W1	3.8e-128	Alliinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	42.01	8e-106	380		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06196	AT1G34060.1	457	246	8	10	457	3	449	42.01	8e-106	380
AfisC3G06196	AT1G34040.1	455	245	9	15	462	12	452	41.54	5e-99	358
AfisC3G06196	AT1G23320.1	379	222	8	81	453	13	377	36.15	3e-69	259

Ortholog group

Species	Genes
Allium cepa	g166056.t1
Allium fistulosum	AfisC3G06196
Allium sativum	Asa2G05099.1; Asa2G05134.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	39	92	89.4	1.3e-25
PF04864.10	Alliinase_C	Domain	94	455	473.5	3.5e-142

Gene Ontology

Accession	Ontology	Name
GO:0005737	C	cytoplasm
GO:0009888	P	tissue development
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009908	P	flower development
GO:0016846	F	carbon-sulfur lyase activity
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network