Detail information of AfisC3G06349


Location
GeneChrStartEndStrand
AfisC3G06349chr311325482871132564161+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020244398.13.9e-188LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 19-like
SwissprotQ9SIV5.36.9e-134Protein Needed for RDR2-independent DNA methylation
trEMBLA0A8B8IYC11.0e-166zinc finger CCCH domain-containing protein 19-like isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G51120.140.431e-152 538DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag134763.t1
Allium fistulosumAfisC3G06349
Allium sativumAsa2G05372.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02201.15SWIBDomain72379654.76.4e-15
PF03126.15Plus-3Domain86497173.81.3e-20
PF02213.13GYFDomain1142118643.51.7e-11

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0005634Cnucleus
GO:0016571Phistone methylation
GO:0018024Fhistone-lysine N-methyltransferase activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.