result

Gene information

Detail information of AfisC3G06421

Location

Gene	Chr	Start	End	Strand
AfisC3G06421	chr3	1148490743	1148492061	-

Sequences

CDS

Protein

Gene

>AfisC3G06421
CTCTTAGATAGTATAAACTGAAATTTTAATGATAGGAGTGATAAAAGTAAAAGAAACTGCTGTTCCTATCTCCCTTTATCTTCTTTACCCATCCTTTTGATATTCTTTTAAATTAAGAATATCGAAGAACTATATACATCATTTCCAAATTAATTAAGAACACGTAGAGATGGAGTTTCCTCAATATCCATTAGCATCCCACTCTCAAGAAATTAATCATACCCAAGATGAAGAAAAGCACAATACCTCCTCATCGAACTCTACCACAAACTCATCTCACCCGGAGCGCATGTTTGAAAAGGTCGTAACTCCAAGTGATGTAGGCAAGCTCAACCGACTCGTCATCCCAAAGCAACATGCCGAGCGCTACTTCCCACTAGACCCTTCTTCCAACGAAAAGGGAGGTCTACTTCTAAACTTCGATGAAATTCATTCGGGTAAGCCATGGAGGTTTAGGTACTCGTATTGGAACTCGAGCCAAAGTTATGTCATGACTAAAGGGTGGAGTAGGTTTGTCAAGGATAAAAGGCTCAATGCGGGGGATACGGTGTCTTTCTTTAGGGGCCATGAAGGGAGATTGTTTATTGATTGGAGAAGAAGAGTGGTTGTACCGGAGATGCCAATGATGCGTTCCAATGTACCTAGTTGGGGTTGGGGTACTCCTTTGTATCTTGGGACTATACCACAGGTAATGGTTGAATATTAGGGTTTGATTGTTTTGGATTGGTAGCTATTTAAAAAGGAAGCAAATAGAAGAACCAGTTTGTGAATAGTTTTCTTTTTTTGGTTGCTTCTAAAATTTTAGACTATTTGTTTTGCATTTTTGTTAAATTTGTTCATCCTAACATTATTAACTGCAAATAGATGTGCATTCTACTTAGGTTGGATTCGTTCCAACATTAATTTAAAACTGAGAAGTATGTCAAATATTTTCGTTCGTCATGTGGTCACTGAAGTAATTAATTAATTTCTAGACTCATTACCAGTGATTTTTGCATTAGCTCTGATTGACAAAATATAAATGCAGGAGTTCACCCGATTTAAAGCTCGAGATCAATAAGGTAGCAGTCTAATCTAAACTAATCATTGCATCTTTAGCATATTTGGTAGCTTAACAAGTTTCTAAAGTGCACTGAGTGATATAGACTAATATATGTTTGATTTAGTGGCTATGATCTCTGAGTTAATCCTTTCAATTTTTCAACCAAAGCTGATGACGCTAGTATTCATATGTGTTGCTCTAAAATTAATTATTTCTTATTGCCTAATTAACAATATTGATGACTACCTAGGTTAGAGTTGAGCATGGTATATTACAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_018465962.1	3.4e-46	PREDICTED: B3 domain-containing transcription factor NGA1-like, partial
Swissprot	O82799.1	5.6e-46	Protein NGATHA 1
trEMBL	A0A6J0M0Y4	2.4e-46	B3 domain-containing transcription factor NGA1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46870.1	64.38	4e-46	181	NGA1	AP2/B3-like transcriptional factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06421	AT2G46870.1	146	42	4	14	151	4	147	64.38	4e-46	181
AfisC3G06421	AT3G61970.1	135	38	4	19	149	4	133	65.19	1e-41	166
AfisC3G06421	AT1G01030.1	122	28	4	39	155	53	169	68.85	6e-41	163

Ortholog group

Species	Genes
Allium cepa	g473688.t1
Allium fistulosum	AfisC3G06421
Allium sativum	Asa2G05404.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	42	144	93.3	6.2e-27

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009873	P	ethylene-activated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010073	P	meristem maintenance
GO:0010358	P	leaf shaping
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network