result

Gene information

Detail information of AfisC3G06456

Location

Gene	Chr	Start	End	Strand
AfisC3G06456	chr3	1153360049	1153364419	+

Sequences

CDS

>AfisC3G06456
ATGGAGTTGGGTAGTATACTGAGCTTAGATTCCTTCGTTCCCGCTTCATTAGAAAATGATCCTTTGAGTCAAAAGGGTCTCTTTGATTCATCAACCTCTATGCTAAAGCATGTTAGAAGTTCAGCTGAGCAAGATGATTATTGGTCTGAGAGGTTGAAATCTGCTAAAAACGATAGCTTTAATGGAGAGCAAATGCTTAGCTTTTCTTCCACTTCTTCTTGTAATAATAATATAAGAAACAATGGGTCTTTGCCTCCTCCTTATTATAACCCTTCAGTTGCTTCTTCATCTGCCTACCTTTACGGGAATGGAGGCATGAATGTGAGCATGCAAGGAGCAAAAAGCCCATTCTCTCCCTCTCAATGGTTGGAGCTGGAACATCAAGCAATGATCTACAAATACATCGAAGCAAAAGCCCCAATTCCTTCACATCTTCTATTTCCATACAGAAGAAGCATCCATCAATCTGCCTTTTCTTTCTACCCATCCGGATCTCTCAGATCTAATGCATATGGATGGGGAGCATTCAATTTGGGGTTTTCTGGAAATGGGGATCCAGAGCCCGGAAGGTGTCGGAGAACAGACGGCAAGAAATGGAGGTGCTCGAGGAATGCATTTGCGGATCAGAAATACTGCGAACGGCATATGAACCGAGGCCGCCATCGTTCAAGAAAGCATGTGGAAGGCCCATCTGGCCAAGCCTCCAAACCTATCTCTACTGTTGCTAACTCCCCAACTGATGTTTCTATTGCTGCTTCCGGAAGCTTGCAGTCCAAAAACATGGATCAGTTTAACAGGATACAAATGGGCAGAGAAGACACAAGCATCAACTCTGAGGACTCTCAAAACCTCTCTTTACAACCAACAGCAAGTCCTAAGAATCTAAACCCATTCGAAGCGGACTTTGGATTATCTTCTTCGCACTTCCTCCAAAACTCTTCTAGAGCCTTCCATTCTAACTTAGCCACTCAACCCCTTCATCGTTTCATAGACGAATGGCCTAAAACAACTATCACCGACTTCTCATCCTCATCAAACTCTCCCAACAAAGATGCATTGCCTCTTTCACCCCTCAGGTTATCTCGAGAGTTCAGTACGATAAATGAAGATGATGATGGTCAAATAAACATAAACTGGAATCCTTCTTCTGTAGGCGGGCCTTTAGGAGAAGTCTTGAATACTACAAACTGCTCCACTTCGTTATATGTTTTGACCGATGAGCTGGCATCTCCTACTGATGTTCTTCAGAAAACTACTTTTGGATCGGTCTCTAGTAGCACTGGCAGTAGCCCAAGAGCTGAAGTTAACAAGTTATGCGATAATAATAACAATGGCATCTGTGGTGCTTTTCTTGGTTTGAAGTAG

Protein

Gene

>AfisC3G06456
GTTTACTCCTCCCTAGAAAAGAGAAGAAAACAGGCTGTTGCTTCACTCAGCAAAAATCCAAACCCAAAACCTCCTTCTTCCCTTTTCTCGATTTTTTTTGTCTTCACCCCATAGAAGCAACCAGAAAAGAAAAGAAAAGAAAAATGCTTCTCTTCTTTGCTAAACTCTTTATGTTTAGTTAACTGTTTGATTCAATGGAGTTGGGTAGTATACTGAGCTTAGATTCCTTCGTTCCCGCTTCATTAGAAAATGATCCTTTGAGTCAAAAGGGTCTCTTTGATTCATCAACCTCTATGCTAAAGCATGTTAGAAGTTCAGCTGAGCAAGATGATTATTGGTCTGAGAGGTTGAAATCTGCTAAAAACGATAGCTTTAATGGAGAGCAAATGCTTAGCTTTTCTTCCACTTCTTCTTGTAATAATAATATAAGAAACAATGGGTCTTTGCCTCCTCCTTATTATAACCCTTCAGTTGCTTCTTCATCTGCCTACCTTTACGGGAATGGAGGTAAGATTTCAAGATACAATCTTTTAAAATCATTCTCATAAGTATTACTAAATGTATATTTTTCAAAAGTCAATACTTAATCTTTGTTTCAAGCATTGTCAAGAAAAAACAATAATAATGCAATAAATAAAGTAAAGTTGAGTTCTTTCTCTTTATTCCACCTTCGTATCATATAATAAGTTTGTTTACCTTTTTACAAATTTGTTAGTATTGCTTTTTTCTCAGGCATGAATGTGAGCATGCAAGGAGCAAAAAGCCCATTCTCTCCCTCTCAATGGTTGGAGCTGGAACATCAAGCAATGATCTACAAATACATCGAAGCAAAAGCCCCAATTCCTTCACATCTTCTATTTCCATACAGAAGAAGCATCCATCAATCTGCCTTTTCTTTCTACCCATCCGGATCTCTCAGATCTAATGCATGTGAGCCTTCTTTGTCCTGATTTTACATTTTTTTTTTTGGTAAATTATTTTGTGAAATGGAAACCGGCGGTTGTAGATGGATGGGGAGCATTCAATTTGGGGTTTTCTGGAAATGGGGATCCAGAGCCCGGAAGGTGTCGGAGAACAGACGGCAAGAAATGGAGGTGCTCGAGGAATGCATTTGCGGATCAGAAATACTGCGAACGGCATATGAACCGAGGCCGCCATCGTTCAAGAAAGCATGTGGAAGGCCCATCTGGCCAAGCCTCCAAACCTATCTCTACTGTTGCTAACTCCCCAACTGATGTTTCTATTGCTGCTTCCGGAAGCTTGCAGTCCAAAAACATGGATCAGTTTAACAGGTATAAACTATATGAATAATGCACTTAGGTAAGGTCATCGGTCACTATTTCCTAATCAGGATCATTTAGCACTTTTTATATTAAGGGCTTAGCTATGATGTTTAACCCTTACATGTCAAACTATTTACTTTGTGCTTACTGAAGTGTTTAATATTTTTTACATTATTAAGAAACACTTAATAAACAATATTTTGATGGTAAACAAACATACTTAAAACTTACCTATTTTCACCGTCAAGGTTATTAATGCAAACAAATGCAACTTTCATTATTTTCCTAGACTGTTGATAGTTGAAATATCAATAGATAGTTATAGAACCTTACCGTTTAATGCTGTTTCTGATAATTTTGCTCAGTTAAATTAGTTAGTACTTTGCGTGTATATTGCAGTTATATATGTATTTGTGTGGATGAAAATCAAGGCTAAAATAACTCACGTTATATGGATGTCATCAGTGCGAAACTTATGTACGTAATCATTTGTGTAGAAACTGATGTTTCTACGGTTATAAAAGCCTTTTATGTTCTAACTGTGCATAGTATAAGTAAAAGTAACATGTTGATGTTTAAAATTTTAATGTATGTGTTTTCTTTAAATTTTTTTAATTACACTCATGGTAAGATATACAAAGATGTTAAAAGCAAAAATAGACCCATAGCTCATTCCAGTGATCCACCCTTTTGCATTGTCTTTCTATTCTTTGTTGTTTCCCTTTTTAGATATTGATAAAGATGTCATAATTGAGACTTTAATAGTTACAGTTAATCAAGTGCATTGAATATTTCTAAAAAAGTGAAATTGTGATTTAGTATAAAAGATGCAAAGCTAGAAGAGAAAACAAAAACAAAAATTCTTGAAAAAGAAAAGGTTCATAAAGAATACAGTGATTGCATGTTACGCAAGGTTTGAAGTTGCAACTTTCAACACTTCATAATTCAAGTCATACATATGGCAGGCAGTTCTGGTAAACTGCCTATTTCTACATTTGGAGGTCAGTCCAGCTATGCATTAGTTGTAAATACAAATATTGTAGATAGTTACTGGCCATGATCTTTCACCTAGTTAGTGATGGAAGTGATGGAAGCTATACAAAATTATTTTAGGTTTTAAAAAGTAAATTAATAGACAATTTTATGTCATTTTTTATTATCTTTCAACTAATGTCAAAATATAATATTGAAAGATGCTTATTTTCTCATATCAAAATTGATCCTGATTTTTGCTTTTAAAAAACGAAAATGTCACTTTTTGAAAGCTATCCACAAATCCTAATTTGTAGGTTTCTGAGGATACCACACATTAAAAATTAACTCATACAACAGAAGTGACTAACCAAGTTTGAAGAAAATAAAGTGATTGGTAAAGTGGTGTCGGTTTTCAAAAATATCTTCACTGTTTATCATATCACTTGCACTTAACATATTCTTTCCATTTATAACAAGCGCATTTCAGATTATTCAGCAGAGAGGAAGAAATATTTCAAATAACTACAAAGTTGAATGATACATAATAAATAGAGGAAGAAATTTATAAACTTGACTTTGTGGAGTGATCATGGAAATTTATAATTAACCGAAGAGCCCAAGGAGTTGGTAACATCTGCTTCCATCACTGCCTAGTACGGTTGAAAATTTTGTATAGCTGGCAATATTAAGTTATCATTCAACTTTGTAGTTATTTAAACTATTTCTTCCTCTCCTTGTTAATGAAGTTTGAATTGTGTTTGTTATAAATGGAAATAATCGGTTAAGCGCAAGCAGAATGGTAAATACCAAGGATATATTTGAAAGCCATGTTATGACACCACTTTACCAATCATTTTCTTCACTTCAAACTTTATGGTTAGTAGCTTTTGTAATATAAGTTAATACTTAAATCTGTGGTATACTTAAAAATCTACAAATTAGGGACCGTTTGTGGTAGCTTTCAAAAAGCGACTTTTTTGCTTTTAAAAGCAAAAATCAAAGCCAATTTTGATATGAGAAAATAAGCATCTTTTGACGTTATTTGGCAGATAATCAAAATTGATATATAAAACCGTCTATTAATTTATTTCTAAAATCATTTTGTTAAAAAAAGAAACCAAAAGCGCTATTGCTTTTGATTGCCAAGTATTAGTCACTTGGACATTACAACAAATCGAAAATCTGTAAAATGTAGAAGTCATTTTTGTTTCCTCCTACGCCTTAACATGGAATCTGAATGGCATACAGGAAACGTTCCAAATACAATAAAATATAATGGCTACGGTAGGAATAGATTGACCCTTCATGTATTATATTGATCATATTTCCATCGTCATCATATACATGAGATATAATGGCTATACAGGATACAAATGGGCAGAGAAGACACAAGCATCAACTCTGAGGACTCTCAAAACCTCTCTTTACAACCAACAGCAAGTCCTAAGAATCTAAACCCATTCGAAGCGGACTTTGGATTATCTTCTTCGCACTTCCTCCAAAACTCTTCTAGAGCCTTCCATTCTAACTTAGCCACTCAACCCCTTCATCGTTTCATAGACGAATGGCCTAAAACAACTATCACCGACTTCTCATCCTCATCAAACTCTCCCAACAAAGATGCATTGCCTCTTTCACCCCTCAGGTTATCTCGAGAGTTCAGTACGATAAATGAAGATGATGATGGTCAAATAAACATAAACTGGAATCCTTCTTCTGTAGGCGGGCCTTTAGGAGAAGTCTTGAATACTACAAACTGCTCCACTTCGTTATATGTTTTGACCGATGAGCTGGCATCTCCTACTGATGTTCTTCAGAAAACTACTTTTGGATCGGTCTCTAGTAGCACTGGCAGTAGCCCAAGAGCTGAAGTTAACAAGTTATGCGATAATAATAACAATGGCATCTGTGGTGCTTTTCTTGGTTTGAAGTAGTTGTTGGACGACTGTGTTTTAGAGGTCACCTAAAATAAGAATATTTTATTTTATTTGGTTTTGTTTTATGTATGAGTGTGTTGTTTGTGTTGCTAGAGTGGATCTTGTTGTTTACAAGCTGAGTTCATGTGTATTTTATACAGTTTTTAATATCAATATGAGCAAGGATTTGAAAAGAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK76042.1	7.7e-100	uncharacterized protein A4U43_C03F23250
Swissprot	Q6AWY3.2	2.8e-62	Transcription activator GRF6
trEMBL	A0A5P1FD59	5.5e-100	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G22840.1	40.65	2e-58	223	AtGRF1;GRF1	growth-regulating factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06456	AT2G22840.1	433	154	18	63	421	85	488	40.65	2e-58	223
AfisC3G06456	AT4G37740.1	435	184	13	58	420	89	507	37.47	1e-55	214
AfisC3G06456	AT3G13960.1	130	52	3	100	228	4	124	52.31	5e-35	145

Ortholog group

Species	Genes
Allium cepa	g216022.t1
Allium fistulosum	AfisC3G06456
Allium sativum	Asa0G00129.1; Asa2G05391.1; Asa3G04291.1; Asa3G04294.1
Arabidopsis thaliana	AT2G22840.1; AT4G37740.1
Oryza sativa	LOC_Os03g51970.1; LOC_Os12g29980.1; LOC_Os12g29980.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	116	148	49.0	3.4e-13
PF08879.7	WRC	Domain	186	228	71.9	2.4e-20

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005739	C	mitochondrion
GO:0005773	C	vacuole
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005794	C	Golgi apparatus
GO:0006807	P	nitrogen compound metabolic process
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009755	P	hormone-mediated signaling pathway
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019222	P	regulation of metabolic process
GO:0046686	P	response to cadmium ion
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development
GO:0071704	P	organic substance metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network