result

Gene information

Detail information of AfisC3G06463

Location

Gene	Chr	Start	End	Strand
AfisC3G06463	chr3	1155497410	1155502006	+

Sequences

CDS

>AfisC3G06463
ATGCCCTTTAATCAACCATTTCAAGTCCTAGATTCAACAAATTATTGGGGTAGCGATATCGACTGCAAGAAAAGGAAAAACGTAATCTTTGAACCAAACTCAGTTCTTGACCATAAAAGAAGCAGAATAAGCACAAGCCCATCTGCATCTTCATCAACGCTGTCTACTTCTCTAGGCAGCACCGACCCCGCCACCGCCTCGCCCGAGGTCGGTGGGACCAACCTGGATGAGAAATGCACCATTGGCGGGCCCCACTTGGATGATTTAGAAGCCATGCTTTCTGATTCAGGTGGGCATGACCAGAGTTTTCTACATTGGATTAGTGGTGGTGTTGGTACTGATACCAATGTACAAGATCATGATGGAGATGGATCGAGTTTTGGGTTAATGGATAATCCATATAGTACCGAACCAATTGGAGCAGCTCCGTTACATCTACCAAACCCTTTGTTCTCAGAAGAAGCCATGGAAGAGAAATCACTTGATTTCAATCAAAATATAATGTTCCCAAATCAAAATCCTTCCTTTTTGCTTCCAGTGCCTCAGTTTACCAATCAACTCCAAACCCATTTCATAGATTCTTCTAATTATGCTCCTACTGCTAACGCTAGTAGCCTGTTTCTTCGAAGAAATCAGCTTCAAAATCCAAGCTTTATGAACCATAATGCGGTTTCTTTGAATACAAGCGATGATTTAGCTGGTCAGTTGTTCAAGGCTGCTGAATACATCGAATCTAGAAATATTATAGGCGCCCGTGAGATATTGGCGCGGCTCAATCAATGCTTCCCTTCTCAACCTATCATAGGGAAGCCTCTATTTCGCTCCTCCTTTTATTTCATGGAGGCTCTTCGTCTTATCATCAACAACTCTCTTCCTAATACGACCTTATCTACCCCATTTGATGTTCTTCTAAAGCTTGGAACTTACAAATCCTTTACCGACATCTCCCCTATTGTCCAATTCACAAGCTTTACATCAATTCAAGCAATACTTGAAGAAACAAATGGGCATAGCAACATTCATATTATTGATTTTGATGTCGGGTTTGGTGGACATTGGTCTTCTTTTATGCAAGAACTAGCTCATAGTCGAGGAGGAGGTAATTGTTCTCTCAAAATTACGGTTTTTGCCTCCAATTCATCACATCATCCTCTTGAGCTTCATCTCACCAAAGAAAACCTCTCTCATTTTGCGGCTGAGCTCAACATCTCGTTCGAATTCAACGTGCTAGGTCTTGATTCCTTTGATGCATCTACACTGCTTTCTTTGACATCACCAACTGAAGCTATTGCAGTTAATTTGCCAATTGGTTCTGGTATAAATTACCAATCTATCCCCATCATTCTTCGAGTTATAAAACAAATGAATCCTAAGATTGTGGTTACGATCGAACATGGAAATGATAGGAGTGATTTCACGTTTTCTTCCCATTTTTTGCATGCTTTTCAATCTTGCACTGTTTTGCTTGAGTCCATTGATGCTTCGGGAGCTAGTCAAGATGTTGCAAGCAAGATAGAAAGGTACATAGTGCAACCAAGGATTGAGAATGTTATGCTAAGCAGACATAGAGCGATGGAGAAAATGGTGCCATGGAGGAGTTTGTTTAGTTCAATTGGGTTTGCTCCGCTTCAATTTAGCAATTTCAATGAAACACAAGCTGAATGCCTACTAAAAAGAGTGCAAGTGAGGGGCTTTCAAGTAGAGAAAAGGCAGGCTACGTTGTTCTTGTGTTGGCAGAGAGGGGAGCTTGTATCAGTCTCAGCATGGAAGTAA

Protein

Gene

>AfisC3G06463
GACCACCACCATTCTTTTTCTCAAAAAATATCCTTATTTTATTTATAAAATTTAAAGCTTTCGATTGAAGAACAAGAAGAAGAAATAAACAACTGCAAAATTCCTACTTACAAAGCATGAGAGGAGAAACAAAGAAGGAAGGAAATACTGACAGGTGATGCAAAAAACAAGCTCTCATTTCAATTTCATGTCCATTATTTATTCTTCTTCCTTCTTGATTTTCGCTTAAATTCCACGCTTATTTTCATCAAGTTTGCTTCTTTCTCTGTTTTCCAAATTCTATTCTAGTTTCTCTACGAACCCAAATTTCTATTTCAAGTCGTCAACCTAAAACGCAGTAGAAAATATCAGCTCTTTTTATGTGACTTTCTCTGAATTTCTACACAAGAAAGTTTGAATCTTGCTTCATTTCTCCAATTCAACTGCTAATAATCTACAAACCCATTGTATATCTCGATATATGAATTTGAATACCGTGAAGAAAAAACAGTTTTCTCTGCATGTGCATTATCGTATTTATCATTAGTCAATTAATACTGTTGAATAAGAGGAATGCCCTTTAATCAACCATTTCAAGTCCTAGATTCAACAAATTATTGGGGTAGCGATATCGACTGCAAGAAAAGGAAAAACGTAATCTTTGAACCAAACTCAGTTCTTGACCATAAAAGAAGCAGAATAAGCACAAGCCCATCTGCATCTTCATCAACGCTGTCTACTTCTCTAGGCAGCACCGACCCCGCCACCGCCTCGCCCGAGGTCGGTGGGACCAACCTGGATGAGAAATGCACCATTGGCGGGCCCCACTTGGATGATTTAGAAGCCATGCTTTCTGATTCAGGTGGGCATGACCAGAGTTTTCTACATTGGATTAGTGGTGGTGTTGGTACTGATACCAATGTACAAGATCATGATGGAGATGGATCGAGTTTTGGGTTAATGGATAATCCATATAGTACCGAACCAATTGGAGCAGCTCCGTTACATCTACCAAACCCTTTGTTCTCAGAAGAAGCCATGGAAGAGAAATCACTTGATTTCAATCAAAATATAATGTTCCCAAATCAAAATCCTTCCTTTTTGCTTCCAGTGCCTCAGTTTACCAATCAACTCCAAACCCATTTCATAGATTCTTCTAATTATGCTCCTACTGCTAACGCTAGTAGCCTGTTTCTTCGAAGAAATCAGCTTCAAAATCCAAGCTTTATGAACCATAATGCGGTTTCTTTGAATACAAGCGATGATTTAGCTGGTCAGTTGTTCAAGGCTGCTGAATACATCGAATCTAGAAATATTATAGGCGCCCGTGAGATATTGGCGCGGCTCAATCAATGCTTCCCTTCTCAACCTATCATAGGGAAGCCTCTATTTCGCTCCTCCTTTTATTTCATGGAGGCTCTTCGTCTTATCATCAACAACTCTCTTCCTAATACGACCTTATCTACCCCATTTGATGTTCTTCTAAAGCTTGGAACTTACAAATCCTTTACCGACATCTCCCCTATTGTCCAATTCACAAGCTTTACATCAATTCAAGCAATACTTGAAGAAACAAATGGGCATAGCAACATTCATATTATTGATTTTGATGTCGGGTTTGGTGGACATTGGTCTTCTTTTATGCAAGAACTAGCTCATAGTCGAGGAGGAGGTAATTGTTCTCTCAAAATTACGGTTTTTGCCTCCAATTCATCACATCATCCTCTTGAGCTTCATCTCACCAAAGAAAACCTCTCTCATTTTGCGGCTGAGCTCAACATCTCGTTCGAATTCAACGTGCTAGGTCTTGATTCCTTTGATGCATCTACACTGCTTTCTTTGACATCACCAACTGAAGCTATTGCAGTTAATTTGCCAATTGGTTCTGGTATAAATTACCAATCTATCCCCATCATTCTTCGAGTTATAAAACAAATGAATCCTAAGATTGTGGTTACGATCGAACATGGAAATGATAGGAGTGATTTCACGTTTTCTTCCCATTTTTTGCATGCTTTTCAATCTTGCACTGTTTTGCTTGAGTCCATTGATGCTTCGGGAGCTAGTCAAGATGTTGCAAGCAAGATAGAAAGGTACATAGTGCAACCAAGGATTGAGAATGTTATGCTAAGCAGACATAGAGCGATGGAGAAAATGGTGCCATGGAGGAGTTTGTTTAGTTCAATTGGGTTTGCTCCGCTTCAATTTAGCAATTTCAATGAAACACAAGCTGAATGCCTACTAAAAAGAGTGCAAGTGAGGGGCTTTCAAGTAGAGAAAAGGCAGGCTACGTTGTTCTTGTGTTGGCAGAGAGGGGAGCTTGTATCAGTCTCAGCATGGAAGTAAAGAGGAGGTGATTTTCTAATCCATGTTATTACGGAAGTAACGCCGCGTTTAATTTTATGTATGGTAGGATTTTGTTTTCCTTATCTATGGAAAATTGGACTCAAAATTATCAGGTTAGGTGCTACATATGGTTTATTGTGGTATAATGTTACGTTTGTACTTAGTGTCTAAGTGAATTGTAAACTTCTATTGGTGAAAGAGCTTAATTGCAGATATTGGTTTTCTTCTTATGTACTTGCTATACCCATGTATTCTTTACTTACGATGATACTATGTTCATTATGATACAACATTGAATTTGTCTAAATCAAGTGTTTCCCATGCATTTAGTCATATGGACAGGGACATTTAGTAAAAAGAAACGGCATATTTTCGATAAGCAAACAAAATTTAAGTGCTATCGAAAGCAGTTTATTCTGGCTCTAAATACCAGTTACGACCAGAATCAATTTTGCACTTTTATGACACTATAAGGTCAATACTGGTAATTCTACTGGCAAGAAACACTTATTTATCAACAGGAAGTACTTTGAGTACTGTTGGTAACTCCTTTTCTTGAGGCTAGAATTTTTATATAATGAATAACCATTCTATAGATTATTTCTACTAGATACTTATCCAGAAGTGTTTCTTCATTTAACCTTATAATGGGTACCTCCAATGTTACCATGTTGACTATTGTTCACAGTCATCCAAATAAAGATTAATAACAATCTCATATGGTTTGGTTCTGAAAAATAATTAATTAGGACTTGAAAGATATTTATATCAGTATCATTTCAAAGAATTCATGCATATCTTCTGAGTGTTTAGAACAGCTTGATTAGCATGTTTGGATTCCTTTAGAAGCAGTGCTGGAAGTTTAGTATATTGGTACAGAATTAGACATATACTAGTTAGTTATAGCTTTATAGGCTTATAATAAATACATGCTAAAGAACCCGGCAATTATTTCTAGTATATGTTAATTAGAACCTAGGTTAAGCGACTTTTTAGCCCTTCTAAGTGTGATTAGATCTAAACGTAGGTAATATATATACACCGAAACAAAGTATGTCTGCTATAAAGTCATGAAGGGTGTAATTTTATATTTACCTAACAGGTAGGAAGAAAAACATTTAACAACTGCATTGCTTATTCATGAGCTTGTACTCAATGCTATACTTACATAAAATATATAACTCCCTTTGATTTATCACATGATTATTGTCCTACTCTCACATGTTAACCATTATATTTCATTCTGTATACATCATCACTTGTCCTCTAATTGCCATCCAACACCATTTGTTTAATTATATTTCTTGTGTTATTTAAATCTAAAGCGAACAGAAAGGATTAAATATGAATCAAACCCATGTTGTAGTTGGAGTTAAAGTCGTATGTAAACTGTTGTATATTGATTTGGATTAGTTTATGAATCCTATGCCAACAGACAAACTATTCTTATCTAATTCCTCACATTTGTTTAAGTTAAGAGTTTTGTTTTCATTCTCTCATTTTTCTAAGTGCTAAGCCTAAAATATGCGTAGATCTAAAACTAGAGCTAATGAGTACGAGTCCGTGTTTCGTGGGTTTATTTCCCTAGAGATTTTGGGACTGGAAGGTGTGTGTTAAAATATCATTTTTAGAGCTGTATATACTAATATAAAATTCAACAAAAAAATTGAGTGTTTTTAAGATAACGATTTTAACAGCAAAGGCAAAGATACCTTGCATGAAATGTAGGCAAGCAGAAAGTGGAGAGTTTGGTTTACCAGTTGCCTTTTCTTGAGATTTTGGAAAGGCACATTAGTAATATTTTCGGGTGCCAGAGTACAAATTTAAGTATGAATTAACATATAATATAAACAGTTCTTAACTGTGTATAACACTGTATATTTGGCATAAGTTGCTTTAAGGACTTGACCAAAATCAAGCATGTTTATTATGAATTATAGATTGATGGAGTTTTTTTTTATGAAACAGATATAGTAGTAAGACAATGCCTTTTATTGTTTGGTTTTGGATGTTGCAACTATAAGTAGAATGATTTTTTTTTCTTCCCTGACTATCTTTAGTGACTTTACACTATTTTACAGGCAAGAAGAGCATGGAATAACATGGAAATAAAGCTCCATAATGGCATGCCTGAGATCCTTAATCATGTGATAATTATGTAGTATAACACATAATCATGATACCTATCTTTTGAAGTTGTATCAAAGTGTAATTGATGGCTTCTTTTTGTCTACTTTACCTGATTGTTTATCAATGCATTGTTCCTTAGATT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK59017.1	1.7e-179	uncharacterized protein A4U43_C08F2120
Swissprot	O81316.1	2.3e-85	SCL6-IV
trEMBL	A0A2H4FBN5	5.8e-134	Scarecrow-like protein 6 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00150.1	39.13	3e-91	332	ATHAM3;HAM3;LOM3;SCL6-IV	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06463	AT4G00150.1	529	247	15	76	590	87	554	39.13	3e-91	332
AfisC3G06463	AT2G45160.1	374	175	10	235	590	271	639	47.06	4e-79	292
AfisC3G06463	AT3G60630.1	550	290	20	76	590	96	622	36.73	5e-69	259

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	234	590	291.6	7.5e-87

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006351	P	transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0010224	P	response to UV-B
GO:0043995	F	histone acetyltransferase activity (H4-K5 specific)
GO:0048768	P	root hair cell tip growth
GO:0051301	P	cell division
GO:2000028	P	regulation of photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network