result

Gene information

Detail information of AfisC3G06508

Location

Gene	Chr	Start	End	Strand
AfisC3G06508	chr3	1160633382	1160635163	+

Sequences

CDS

Protein

Gene

>AfisC3G06508
CAAAGATTGTATCAATGGCATTCAAAAACGAAGATTTAAGGCTGAGCCTAAGCCTTCCCTCTTCTCAAAATTGTTTCCCTTTAGAATTAATAATGTTTCCTTCTTCAATGCCACACTCAAAAATCAATTATATAGAGGAAGATCCAGAGCAATGCTCACCTACAAGCATATCACCGAGCTTATGTGGAAAGAGAACTGAAAGAGATGATAAAGAAAATGAAGATGGGCAGAATTCCCAGAAAAAATTGAAGATGTCAAAAGAGCAAACGATGGTACTTGAAGAAAGCTTCAAGGAACATAATACTCTTAATAATGTAAGTTGTGCTTGCCAATGCAAATAAAGAATAGCTGCATTAAATTTTGAATAAGTTTTGAGGTTGTTGTGGTATGTGCAGGAAGAGAAGGGGGCTCTGGCAAAGCAGCTCAGCTTAAGTCCTAGGCAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGTATAAATATTTCTGTAATTAAAATCAGTACTAAAGGCCAAATATCCACTGTGCAAGTTGTAAGCCTCATACCAATGTGATCGAAGATCCTGATTCGATACTTAAGACATCAATTACAACTTTAAAAATAATACTGAAAAGCACAATATAATTTTTCTTGATTAAAATTGCATATATATACACACACACACACACATATATATATACATATACATATATATACATATATATATATATACATATATATATCGTCAGTGGTGTTCAAATATTTTTTTTCTTTTCTTTCTTTTGTTGTTGTTCATGAAAAATATGTCATGAAGCAGATACACACACATACAAATATACACATTTTGTGTGTTGTGTATGTATGTAGGGAAAGAATTAGCTACTCCTCATTTTTGTTGCACCTCTATTCCCTCCTGGTTTCAACTACACATTCATATTTAAATAATATAATGAGATGACAAAAGAGGAAATATATTATTTAAAGCGGAATGTGTGGTTGAAATCAATGGAGAATAGAGGTACAACACAAATGAGGTATGTTGTATTGTTTTGTGATGGCGATGACCCAAGTCTGAGTCGGGTGTGGGATAATTATTCTTGCTTTACAATTTCTTTCATAAATAAACCATAATTTTAATTTTGGGTCAGGACAACCAAATCTCTAGATCGGGGCTGGTGACAATAATAAAAATTTATTGGCAGAGAACCTAGTTGGAAACAAGTGCACTGTAGTCTTAATCTGCATGCATCACCTTATATACTATATGGAAAAATAAGTTTGTCCAGAACTCAGGAATTAATTTCGAGATATTAGAACTAACCCCGACCTTGAATAGACACAATATATCACCACTAAATGACATGCAAAATATAGACACATCCGTTTTTTCTGTTAATATCAATATTGTTATATTTTCAAGTTTATTAATTATAAAAATCATCTAATTGCAGAACAAAGTTGAAGCAAACAGAAGTAGAATGTGAGTACCTGAAAAGGTGGTGCCAAAAATTAGCAGAAGAGAACAAAAGGCTTCAAAATGAAATTGGAAAGCTGAGATCTCTCAATTCAGTATCATCACCTACAGCATTAAACATGTACCCTTCAATTGAAAGCATAAAAACGCCTCAATCAGAACTGTGGGTCCCATACTATTTTTTAAGGACCTCATTTTAATTCATATCAAATTGATGATAATTGGATTTACATACAATGAACGATAGTAGAACTGTCAGTAAACAGTTTACTGATTGGCCTCTGTAACAGTTTATCAGGCTGAGCGATTTAATCATATGAATTGAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241926.1	2.1e-57	homeobox-leucine zipper protein HAT4-like isoform X2
Swissprot	Q05466.1	6.7e-37	Homeodomain-leucine zipper protein HAT4
trEMBL	A0A0D2S5V1	2.9e-37	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47370.1	43.55	3e-40	161	HAT2	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06508	AT5G47370.1	248	79	5	1	187	1	248	43.55	3e-40	161
AfisC3G06508	AT4G16780.1	170	65	2	33	185	76	245	51.76	3e-39	157
AfisC3G06508	AT4G17460.1	254	80	6	1	187	1	253	41.73	2e-38	155

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G06508
Allium sativum	Asa6G03464.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	76	129	61.0	6.4e-17
PF02183.15	HALZ	Family	131	164	36.3	4.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network