result

Gene information

Detail information of AfisC3G06551

Location

Gene	Chr	Start	End	Strand
AfisC3G06551	chr3	1167925471	1167926926	-

Sequences

CDS

Protein

Gene

>AfisC3G06551
CCCGGCACAACTCTCATCCTCCAAAAAAGAAACATCGATAGCAAAATAATCAGTTAAAAGCAATCGATGACGCCAGCGGTCGATTCGCCGTTGGAGAGGTCTCTGCCGACGCCGTTTCTGACGAAGACCTACCAGCTCGTCGAAGATCCGGCTAGCGACGACATCATATCGTGGAATGATGACGGATCTGCTTTCGTCGTCTGGAAACCTGCTGAGTTTGCCAGAGATCTGTTGCCCAAGTATTTCAAGCACAACAATTTCTCAAGCTTCGTCCGCCAATTGAATACTTATGTAAGTTTCAATTCCCTCTTCGTTTGCTTTTTGATTGAAATTTGGGAACTAATTTTTCGAAATTAATTTCTGTTTTGCATAAATATATCAGGTTTCTAGAAGTGGAAATTTCGCAAGTTTCATTCAATTTCTAATTATTGCCCATTTTCTCAGTTTTGTCAGGCATTATTCCTTCTTTGGTTCATAATACTAATGTCAACAATAATAAATTAATAATAACCATTTTATTCTCTAGTAATTAGTTTCTATCACAGGTGTTGGTAATCATTTATATAAAGTTTCCTTATTTGATGGTAATCTGCTATGATGTTAATAAGCTTTATTGATTTAATTTAGGGATTCAGAAAAATAGTCCCAGATCGATGGGAATTCTCAAACGAATCATTTAAAAAGGGGGAAAAGCAACTCCTACGAGAAATCCAACGTCGTAAAATATCAACGCCAGCAACACCAACTACACCAACCGCCGTCGCAGCAGCAGCGGCGGTCACAGTAGCAATTCCAACAGCAAATCTGAGCGGTTCTTCCAACTCCGGAGATGAACAGGTAGTGTCATCAAATTCATCGCCGCCGCCACCGTCCGTGACTATAGCAGCAGGTTGTTCATCGGATCTTCTAGAAGAAAACGAGAGGCTAAGAAGAGAGAATTCCAGGCTGTCCAACGAACTAGGCAAAATGAAGAATTTGTGCAGTAATATTTACTCGCTTATGTCCAAGTACGGTGGTGAATCGCCGTCCGTAGGTGCGGCCGTAGAGCTAAATTTGATGCCTAGGCAGATGTCGGAGGTGACTCAGGTGTGTACAAAGATTTTCGGAGTTTCAATTGGCTCGAAACGGGCGCGGGAGGAAGTGGATTCCGATGTTAAGTTAGAACCGTTTGATTCGGGTTCGGGTTCCGGGTCGGGTTCGAACCTGCAAGGCGAGTGTATTGATAAGAGCCCGTTGGGGAAGAAAGTATAGTGCAATGTGGTTAGCTTCTCTAACATGTGGATGAATTTTAGTCGATTTGTCACCTGACCATAAATGTGGTCACGTGAGATGAATGTAATCTGTTGGATCGATGTTATTATACATAATTTTATTTTCCTGTGAAAATTAGGATCTTTATTTTCAAATTTAATAATGAAAATTATTTCAAAATCTAATTTTAGCTTAAATTTACAGT

Functional annotation

Database	accession number	e-value	annotation
nr	QBC36001.1	1.4e-59	heat shock transcription factor B2b
Swissprot	Q9SCW4.1	7.0e-48	Heat shock transcription factor 6
trEMBL	A0A411JIK6	1.0e-59	Heat shock transcription factor B2b

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G11660.1	47.52	2e-64	242	AT-HSFB2B;HSF7;HSFB2B	winged-helix DNA-binding transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06551	AT4G11660.1	322	107	8	10	269	53	374	47.52	2e-64	242
AfisC3G06551	AT5G62020.1	259	104	6	6	246	13	266	50.97	4e-64	241
AfisC3G06551	AT1G46264.1	208	83	4	11	203	29	231	50.48	4e-52	201

Ortholog group

Species	Genes
Allium cepa	g88680.t1
Allium fistulosum	AfisC3G06551
Allium sativum	Asa2G05473.1
Arabidopsis thaliana	AT5G62020.1
Oryza sativa	LOC_Os09g35790.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	17	106	114.4	2.6e-33

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008356	P	asymmetric cell division
GO:0042802	F	identical protein binding
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network