result

Gene information

Detail information of AfisC3G06562

Location

Gene	Chr	Start	End	Strand
AfisC3G06562	chr3	1170405725	1170408342	+

Sequences

CDS

Protein

Gene

>AfisC3G06562
AGCAAACTTAACATACATTCCTGAGGCTTTATTCAGAGCATTACGATTTTTTAATTATTAAAATACTTGGTTTTTTATTCAAAAAATTAAGAAGTCATAGCAGAAACAACTAAGCAATCACCCTTCAAAATCCATCTTATATAAATTCTCTTCTCATATCTATATCTATCTGCAGACATTCATTGTCGTTTCTTTTCAGATTAAGTGCCCAAAAAAGAAGAAGAAAAAACAAGATTCAAATTAAAGCTGCCTCCCAAAAGCTTTCATGGATTCTTCTCAATGGGCTCAGGTTAGAGCTAGAAATTAATATTATGATTAATAATCTTTCCTTACTGATCTATGATTTAACTTAAATATTAAACTTTTCTTCTTCTTCTTTTTTGAGATACATATGAAGCTTTTGGCTAAATTAATAGACCTCTTTCATTTTGCTTTTAGTCTTTTATCCATTTAAAGTGATAATCAAGTTCTTCACTTTATTTTACCTTTTCTTTTTTAGTACTTTTCAGCTTTTTTTGATTAAAAGCAGTGCCATTATATGGTATTATTTTGTTCAATAGAGGCACAAAGAAGCTTTTTCTTATTTCTTATTATTGTTTTATTTATCTTTTTAACTTTTTAATATTATAATTTAGTACTTTCAATAAAGATGCTAAGAGCACTGAGATAATTGCTGTGGTTGGCTATCTATATGTCTGTTTGTTAGTTAGTTCTTGCATGATTCCTATTTCATCTTTGATTTTATGAAGAAAAAAGGAACCTCTTGCAGATTTCAGTTCTCTTCCTTCTATAAATATTTTCTGCAAAATTAATAAGGTTTGTCTTCAGATACATATTTTAATTTCTGATTTATTTTTTGATTTTTTCACAGTGTTATTTCTCCGTATAAAGCACGCTTATATTTTTTATGAAAATTATTTGATTTGAACATTATCGTCCTGTATCTATTTTATAGTTAGTTCCTATATATACACGTTTTCTTCTCTTCAAACTTTGATCATTTTTCTTTTGAGAGAAAAGTAGTTTGATTAAATAAGATATTGATCATCCCATGAATTTTAATATCCTTTTCCTTTCTCCATTATTTATAAACTACATTTTTTGGACAAGATAAGTACATCGTTTTACATAAGATCATATGAATCCAGTTTCGAACTATTTAAATTGTTGATAAGAAAATCAGGCTTTCATACTAAACCCAATATTTTTTTTTTTCAAAACATTAGAAAGGAAAGAGTTGAATTAGCATGACAATTTCTTTAATAAAATAAACTTCATTCTGCCCTAAATTCGTGTGTTTTTAATATTTAGCAACTAAGATTTCTACTTCTTATATATTTTTTTTAAAATATATTAATTAGTCAATTCTTGGACGACTTACAAATAGTATTGTAAAATATTAAGTTTTTTTTATTTGACATGCCCAACAAAAATTTACCTATTCTAACTTAATGTTTTGTATTATCATCATGTTATGTAATAACAATTCCTTAAGTAGGTCTCCTCCACTACTAACAACATCAACAATGGAACAAGACCACCACCACCACCACAACAATTAGTTGAAAAAAGAACAAGACCCGTAAAAGAACAAGCAGTCAACTGCCCAAGATGCAACTCAATAAACACAAAGTTTTGCTACTACAACAACTACAGTCTCTCTCAACCAAGGTACTTTTGCAAGACTTGTAGGCGATATTGGACAGAAGGTGGAACACTGAGGAACGTTCCGGTTGGTGGAGGATCTAGAAAGAACAAAAAGCATTCATCATCAAATAAAGCTGGTAATAATCAACCCACTAATCCAATTATACCATCTAATTTGATTATGTCAAAGCCAAGTTATCAAGGACAAGATCTAAATCTAGGATTTGAAAACAACAACATGATGCTACCTCAACTGTTTGGTGCAAGCTTTAGCAATAATAATATTGAGAATAATAATGGTAGTGGTGGGCTTAGTGCTATGGAGTTGTTGAGGAGCACTACAAGTGCAATGTATGGCAGTGCTGCCATTCAGAATTATGGTGCTAGTGACCATCATCATGTTAAGTTTCCATTGAATAGTATTGGGGATCATGGCATGCATAATTTGTTCCCTTTTGGTGATATGAAGCAAGTGCGTATGAAGTCGAGTAATGAGATTAATGAAGGGATAAATAAAGGGCAAGGAGAGGAGCAAGCAATTGTTTCATTTTGGAATGGTGTTGACAATGTGGGAGGTGGTGGTGAATCTTGGTAAAATTGTAAACCCTAATTTGAGAATTCAAGGTGTGGTTAAGGTATATACAAACTTTTGTTAATTCTATGTATTGTTTCAGTTAATGGTGTTAAAGATTTGTTGTAGTTTATATCAAGTGATGAACTCTTTGCTGTTAACTTGATGGTTGCCAGTTCAATTACAATGTTGCGATGCATTGTGCTTACAAAGAGTTTTTAAAAGGAATGGCAGAATATCTCAACCATTCTTATGCAGTTGTTATCTTCACGTATTCTTCATTAACCTTATCGTGTTCGTGTAATTAAGTGAATCTTAGTTGATGGTTAATACTACTTTGTTAGAGTACATGTTATGTACATTTCTGAACAATATATATAAAATGTTGTGCTTACAAAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_016163291.1	1.1e-25	dof zinc finger protein DOF3.7
Swissprot	Q8LAP8.2	6.7e-25	Dof zinc finger protein DOF4.6
trEMBL	D6MK29	8.2e-28	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24060.1	83.33	2e-31	132		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06562	AT4G24060.1	66	11	0	31	96	42	107	83.33	2e-31	132
AfisC3G06562	AT1G64620.1	97	30	2	1	90	1	97	61.86	4e-31	131
AfisC3G06562	AT3G61850.1	251	91	10	29	227	63	296	36.25	3e-29	125

Ortholog group

Species	Genes
Allium cepa	g403486.t1
Allium fistulosum	AfisC3G06562
Allium sativum	Asa2G05501.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	40	96	116.3	4.3e-34

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010227	P	floral organ abscission
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network