result

Gene information

Detail information of AfisC3G06581

Location

Gene	Chr	Start	End	Strand
AfisC3G06581	chr3	1175231290	1175237488	+

Sequences

CDS

Protein

Gene

>AfisC3G06581
GTCCTTCTAGCATCTGCCCTGTTCGAATATCATATCTAACGGTCCATAAAACTGCCTCTGTTCGATATAAATCCTTCCCATCTCAGCTAGCCAATAGATACCCAGCCCTCTTTCCTAGGGTTTGCTTCATTTTTTTCACAGGAGTAAAATAAAAGGGAAGATCAATGGCACGAGTTCAAGGTTCTGTGACATGGTTCAACAACACAAAAGGCTTTGGATTCATCACCCCAGAGGACGGATCTGAAGATCTTTTCGTTCATCAACTCTCCATCAAATCTGACGGCTTCCGAACCCTAAACGAAGGGGATCTCGTCGAGTTCTCCGTGGCTGAAGGCGACGACGGGCGTCTCAAGGCCGTTGATGTCACCTCTCCTGGAGGATCATCCCTCCAAGGCGGCGCCCCTCGAAATAGCCGCGGTGGAGGTGGAGGCTCCGGCTGCTACACCTGCGGTGAAAGCGGACATCTGGCGAGGGACTGCCCAAATCAAGTTGGAGGCGGTGTAGATAAACGTGGAGTAAGCAGATGCTATGCCTGTGGGGAAAACGGGCACCTAGCAAGAGACTGCGGTAGCGGAGGAGGTAATGGAGGAGGATCTCGTGGTGGAGCATGCTATACATGTGGAGAGGCAGGACACATGGCTAGAGATTGTGAAAGTGGTGGACGTGGAGGCAATGGCGGTGGAGGTGCTTGCTACACATGTGGAGAGACGGGGCATATGGCTAGAGATTGCAACATGGAAGGGGGACGTGGTGGTGCTGGAGGCAGAGGAGGTAGCTGCTACAGCTGTGGTGAAGTGGGTCACATAGCAAGGGATTGTAGCAATGGAGACAGAGGAGGTGGAAGGAGAAATGGTGAAGGTGGAAGAGGGTGTTATAATTGTGGGAAACAGGGACATTTTGCGCGAGAGTGCAGCAATCAAGGTATTGCTTAACTGTTTGAATGATTGTTATTGGTTTTGTCAGCATTTTATATGGTTGTGTGGTGAATAATGAACCCAGTTTGAGGACCATTGTGGTTATAATGGTTATGATTTTATAATCGGTAATGGATACAGGTTTATACTGTCTCAAACTCTTGAATTTTGTTTATTTTGCTAAGTGAGAACTATTATGGTGGTTGAGCTTTTGATTTACCGCTAATCAAGTATGATTACTAATCGTTTATTAGTTGGCAGCATTTTGTTGTTGAAGTCTGTCTAATGGTTTTATGTGTATGTCATTGTTGATTGCGCAACGTGTAAAGTATAATAACAGCCCTATCAAACTTAGCATTCTATATTTTGTGTTCATAATTTCTTTCAACAAGAGCGTGGGAAACATATTAGTATTTAAGTTAAATGTGAAAAGTGTGTGATTGCTGCATTTAAATTATAGATTTGAAATCACCTTAATAATAGAAACACTAGTGAGTAGCCCGTGCGCGCTAGTGAGTAGCCCGTGCTTCGCACACGGGCATTGTTATAATCTGTGAATTATAATCCTCGTAGCAGAAATGTGAAGGTAGTACGGAAAAGTGATCACGTATTTTATATACATGTTAGTGGTCAGTGGAAATTGAATTCATATTACAGCACAGACATGATGTGAAATTATAGTGATAATGTCAGTAACAATGATGTTTATAAGTAGTAGTATAAGTCGGAGCTGAGATCTTAAAAAAAAATCACATATATATTGCGCACGGAAGCAAACGAATTAAATGTCGTACTGTCTGAAGTATATGGTTAAAAAAAAGTGCAAACTGAGTTACTGGAAAAAAAATAGAGTCGACGGCTACAGTGAACGGAACAGTAGTAGACACAGATAGAAAAACATAAATGCACCATAACTATGAAATCAGAAAACGGTAGAAATTAATTTTTTTGCTTTTTCTCTCGAATTTTGATTCCAGTAGATGCTGCAGTCAGCTGATCATCAAGTGTGTGTGATATGCTGCTGCCTGACATCAAAAACAACCACCCAACCTGTCGACTTCAGATACGATGAATGCGCTTAGCAAAGCACTACAGGTGGAAAAGAAAAGGGGTTTAAATAAAGCAATAGTAGTGGTTATACGTGGTTAGACCATAAGGCCGTGAACATCATTTGTTTATTCTAACATGCAGTTATAACATGTGAATGCCCGAAGATGCTACCGCTAATATTAGAATTATGTTGTGCGCACTAATCTAATCTTCTGATGTCAACCTGATACTTGGGTAATAGTTTGGTTTTATAGTATATTATAAATGTCTTACTAAAAGACATCAGCATATTGCTTCCTCCTGAAATCAGGAGTCAATGACAAATTTAAGTACTTTCACAATGCAATGCTATCCTTGAATACTGCTAACACTTAAGATTAAATGAACCATAGAATAGCACAAAGTAATCATACAAAACCAACCGGATTTTAAGTATAGTGTGTTGAAATAAGAAAACAAATACAAAGCTACAAAGTTGTCATACATAATTGTAAATAAAGGACAGAAGTGATTAAGTGATACCTAGAAATTACCGTTGTTTATATGCAGTGGTAAAACAATACAATAATTAATGAACTACAAATTAGTCATATAACATAGCAGTTAAAATACAAAGATTTAAAACAATAGAACTTATAGATAACAAATTACAACACAAATATAGAAAGTTAAGCCAAAATATAGGTATGTAGCATTGTATATCACAGTAGCATTTTATATTTTAACAACACAAATCAGTCTATATGTTAGACATCAGTACATCACAACTTACGCATATCAGCCATGAAACCTCAAACATGGGTAATTATTCAAATGTTACGTGAACATGCTTTCAGAAAACCACACATTAGCAGTAACTTACGCACTAACAGTGGTAGTTAATGTTAAGGTTAGAAAATGTCAAGACGTTGCTGAATCATGGATGTGTTCAGCCATATCCAAAGGGTGAACATAATAAAATCAATTTTTTTTTTTGTAAAAAAAAATGATATCTGATGGATGAATGCCTAGAGCCAAAAAAAAGGGGTTAATAGTTATCCCATTGATCAGCATGTACATTTGGGAAAATAGCAATTTCTGCTAAGCCAGTTGTAAATTTCATCTTATCAACTTCACGTAAGATTTTGCATATTAAAGTGAGAAAAAACCAATAAAGGAGGCCATATGGTTGAACAAATCATTGAAGTGATTTGAAGAAACATGTAATGTACATTTAAGAAAAGTATCAATGGTGTGAGCATTATGATGTAAGGTGTCATGTTAAACAAAAACTTCCTCTTTTACATGAATTTACATCTGAATTAACGTTGAAAATTAGTTGTGCGTATGAAATCTAAAGTATATGTTTGACTGGGATTGGGTAATGACATTGTTTTATAGTGTTTATCAATTGTGATATGCATTGCATTGTTTTAAAATTAAGCGAAATTTTAAGGAAATATCGATTGAAATAACCATTTGTATAAAAGGTTCGTTTAGTATCTGTGAACTGTGAGCAGACCCATTAAATATGTAAATTTGCAAAATGTTGCATGAGTAAACATTGAAGAAAGATTTGTACTCAAGTAATTCAGAGGTCGATGGTTAATGATTAATTAGAAAGAACACCATAAATAGCTATAATTGATTGTTGTTTTTCATATTCAATCTATTAAATAGAATATAAAAAGGAATATCTGTTATATGACAGTTATCATAAATGAAAAAGTACGTCAACAACAGAGGTCAGTCTAAACTATGGTAGAATGAGTTGACGCAGAATTATATGCTGTAATGAGTTGACGTAGAATTAAAGGATGCTATTATATAACGGTGCATATGCTGCTAGCACAGATTGAACATGAACAACAATATGCATATTTAGGAAAGCGAGTACAATGCAATAACACGAGTGATTTGGCTAGTAAACAAAATTTCATGTAATCCCTCTTTTATTAATTCAAATCAAGCAATGAGGTATGAGAAAATGTTAAAATTGTACCTATGATAAGCTTATTATGTTTTTTTTATTCTAACAGACAAAAACCGAACATGAAGATGATAGAGATGAATATAAAAACATTTGAGAAGGAAAAACATTTTAATCAAAAGCCACCTGGTAATTTGAAGATATCCAACTCAAATCGTTCAAGAAAGCTTTGCGAGCACCACCACAGCAAGTGAAACCATTGCATCAGTAGACTGCGGTTTGAGAAGCTGTGCAAATAAAAATTTATGAACTATTACAAAAAGCTGAAACCGAAGAAACAGGAATAAAGAAGGTAGCAACATATTGTCAACAAACGGAGAAAGTAGATTGCAAATTTGTAATAGGTCGACTGAAGATTGGAAAAAAGCATAGGCAGAAAGTAAGATGGTTTTAGAATTAGACGCAACCAAAGTAACATAAACCACAAATTAGTTATGAGCATCGAATTGCTGCTTACCGAATCGTCAACAAATGGTGAACAAATCGAGCCGAAAAATGACAAAGTCGGAATTTAACGGGCGGAAGACGACAGCGGAGAGAAGAAATCAGGCGGACCACAGGAAAACAGAAGTTCGAATATAGCGAGAAAGGAAGCTCATCCGTCGGAGAGGCAAGGAGGAGGATGGGGGAAGAGCAGGCGGTATTATGTTGGGCACTCGGCAGGAAGATCGTGATAATTCGGAAGATGAGGCGTGGAGGAGGATAAATTCGACAGTACGTTTTAGGGAGGAAAGAGGGGAAGAAAGTGGAAAGGGGGAAGAGAAGGGAGTGGGGACGTGGTGCAGCAGTTGAGATGTGGAACGGCAGGTGGAAAAAAAAGAGGAAATGGATAAGTAACTGAAAGCGGAAAAAACAGAGAAGCGAACAGTGGATTGTTATTTTGAAATGGGAAAAGAAAAAGGAGTCCACGTCAGCGTGTGGATGTTCCTGCTTTAGTATAAAGTAATAGATATTAGGTAGAGTTTGTCTTAAAAACAAATTTTGTATTTTTTGTTTTCAATGTATATATCAAATATGAGAGAAGTGGAGGAACAATAAGGAGATGGAAGAAAGACGGAGGGGATAGAGGAACGACGGAAGGATGAATTGTTTGTCATGCTTCCGTTATTTCTCAAAACATGGAAAATAAAAAAAGTTATTTTCTATTTTGTATGTTAATTTCGTTTTCTAAATTGGTCGTTTTCGATAATATGTTTGCATCACGTGTATTTTTGTATGGACGAAAACCTAAAACTAAAAATGACAAACCAATCACACACGGGCTTAGTTTTGGAATAGGTAGGGTGCGTTCCTGGATACACAATGAATCCACTAATGAAAAAGCGGTTGGCAAAAAACACAGTCGATGTATCTACAACACTTGGGACGTGAAGTTACGTCAGCAAGTTTGTTAGGAGCGTTTTCCCTCTAACTGTACGTTCGTTCGACGTATTGTCTTTGCAATATTTCTTTCTAGTCGATCCCCAATCTTAACTTAATCACAGCAAACAAAAACAAACCTAATACTCCTAAAAATATGTGGCTTCTTCATCTGCGTTCTCTGACAAAAAACAAATCCATGAATGGATAGAACTTGAAACTTGAAGATTGATGTTTGCTGTCTGTTGCATCAAACAAAGATGTGTGGGACGAAGAAAGATTTCATTGGCAGGGTTAAAATTTACCTGCGAGATGCTTATAATATCATACTTTGCAAAGGATTCTGGATGTTGATGGATGCAGAGGGTGTTGGATGTGATGCGAGTAGCAAAATTATTACTGATGATGCCGAGTTTACCCACGAAGAAACTGATGGCATATCCTTTTTTGAGATTTTAAGAGTAGTCTCTTGATACGATTAGTTATGATTGATTTCTTGATGAATGGACTCATGACAGGGAATGTGCCCACTCGACAATCAAGTTCAGTTCATGAGTTTGGTGTTTTCCAGTTTTGAAGATAGCGATCGTCTTGTTAGTCAAAAGACGAGGATTGATGGGAGCAATGAAGAAGTCATTGTTGCTTTTGATGATTTTGTCTATCTCTCGTTTACTCTTGGCAACATGGTAAGTTCAAGTATTTATATCCCGCATCACAATACTAAATTCTTAGTCGAAAAACCAAGATTCATGCTGTTGATAGGCCTTCTTCTACTTCTACTCCTGTAACATCAAAATGTTAGTCAAAAGTTGATACTTCGATATGTTAGTACCATTTATTTGTATCTAATTAAGTGATAGATGGCAGCAATGGTGAATTCCATGGTGTATGATTTTTGGTATTTTTG

Functional annotation

Database	accession number	e-value	annotation
nr	VAH91002.1	7.7e-31	unnamed protein product
Swissprot	Q94C69.1	7.3e-26	Cold shock domain-containing protein 3
trEMBL	A0A7J6W699	8.0e-30	Cold shock protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36020.1	50.36	7e-55	210	AtCSP1;CSDP1;CSP1	cold shock domain protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06581	AT4G36020.1	274	106	9	2	254	9	273	50.36	7e-55	210
AfisC3G06581	AT2G17870.1	269	112	7	2	252	9	270	49.07	7e-46	180
AfisC3G06581	AT2G17870.1	137	61	3	92	220	163	299	49.64	5e-16	81.6

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	5	69	85.1	2e-24
PF00098.20	zf-CCHC	Domain	91	107	33.2	3.1e-08
PF00098.20	zf-CCHC	Domain	120	134	26.1	5.4e-06
PF00098.20	zf-CCHC	Domain	148	162	29.7	4e-07
PF00098.20	zf-CCHC	Domain	175	190	31.9	7.9e-08
PF00098.20	zf-CCHC	Domain	204	219	30.6	2.1e-07
PF00098.20	zf-CCHC	Domain	234	250	28.6	8.9e-07

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0001072	F	transcription antitermination factor activity, RNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003729	F	mRNA binding
GO:0051087	F	chaperone binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0008143	F	poly(A) binding
GO:0008270	F	zinc ion binding
GO:0009414	P	response to water deprivation
GO:0009631	P	cold acclimation
GO:0009651	P	response to salt stress
GO:0009826	P	unidimensional cell growth
GO:0010501	P	RNA secondary structure unwinding
GO:0031564	P	transcription antitermination
GO:0032508	P	DNA duplex unwinding
GO:0048316	P	seed development
GO:0060567	P	negative regulation of DNA-templated transcription, termination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09250	CNBP; cellular nucleic acid-binding protein	EC:-	-	-
K03704	cspA; cold shock protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network