Gene information

Detail information of AfisC3G06607

Location

Gene	Chr	Start	End	Strand
AfisC3G06607	chr3	1179228497	1179228805	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_027104977.1	1.0e-15	auxin response factor 18
Swissprot	Q93YR9.1	6.7e-17	Auxin response factor 16
trEMBL	A0A6P6VSP8	7.2e-16	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	61.76	6e-19	89.0	ARF16	auxin response factor 16

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06607	AT4G30080.1	68	26	26	93	278	345	61.76	6e-19	89.0
AfisC3G06607	AT2G28350.1	60	21	34	93	284	343	65.00	2e-17	83.6
AfisC3G06607	ATMG00940.1	65	33	26	90	69	133	49.23	5e-12	65.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06507.10	Auxin_resp	Family	30	102	73.3	1.2e-20

Gene Ontology

Accession	Ontology	Name
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007389	P	pattern specification process
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0010208	P	pollen wall assembly
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0035198	F	miRNA binding
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0048830	P	adventitious root development
GO:0051301	P	cell division
GO:0052543	P	callose deposition in cell wall

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network