result

Gene information

Detail information of AfisC3G06623

Location

Gene	Chr	Start	End	Strand
AfisC3G06623	chr3	1182588592	1182592439	+

Sequences

CDS

>AfisC3G06623
ATGCCTCCATTGTTCTTCTTCCTCCTCCTCTTCCTCCCTCATATTTCTTCACAGACTACAAACTCAAGTGAAATCCAAGCTCTCCTTTCTTTCAAAACCTCTCTTTCTGACCCAATGAACTCACTTTCTTCGTGGAATCCTAATTTACCAAATAGCCCTTGTTCATGGAGAGGCATTCAGTGCAACTCTAATCTTAATGTAGTCCAGCTTCGTCTTCCTCGTCTCAAATTGTCTGGACCCATTTCTCCATCTCTCTCTTCTTTGGGTTTTCTTACAAAACTAAGCTTGCGTTCTAACAATTTTTCTGGTTCCCTACCGTCTTCATTTTCTCAACTCACTCGACTTCGCTCTTTGTTTCTCCATTATAACTTTCTTACCGGACCCATTTCCGAGTTCGCCTTTTCTAACCTCACAAATCTTCAAGTTTTAAACCTGGCTAATAATCACTTTTCTGGGCCTATTCCTGCAAGCATTTCAAGTAACTTAAGATACCTCGATCTTTCTTCGAATGGGTTTTCTGGAAACATTCCTAGCAGTATTCATGATTCCTCTCCAAAGATTCAATTTTTAAATCTTTCCTTCAATAAGCTTCGTGGGACTATACCTCCTTCTATTGGCAAGTTCAGTAGTTTGATGTATTTGTGGCTGGACTGGAATCTTTTGGAAGGAACAATACCTTCAGTTCTTGCAAATTGTTCCAGTTTGCTACATTTGAGTCTGCAAGGCAATAATTTGCAAGGCATTGTTCCTGTTGCCATCGGAGGGATCAGAACTCTTCAAGTTCTTAATCTTGCTCACAATGCACTTTCTGGGCCGGTACCTTTTTCGGTAACAGGTTTGCGGATAGTCCAGCTTGGGTTTAACGGGTTTATGGAGCTTGAAGAGCCTAAATTGGAGGTTCAAAGTGACATCGGTTTTGTTAGACCCAACTTTTTGCAGGTTTTCAATGCCGAAGAAAACAAAATCAGTGGTGAATTTCCGAAATGGTTGACGGAATTTCCAGCATTGACCGTATTGGATCTTTCAGGTAATTTACTTAAGGGGTCTCTACCCAAAGAAATTGGTTCCCTTACTGCACTGCAAGAGTTGAGACTTGGAAGGAATTCACTTACCGGGTCTGTACCCGTTGAGATTGGACAATGTGGATCCTTGCATGTTCTTGATCTTGAAAATAATCAATTCCATTGCAAGATTCCGGTAATTCTTGGAGGAATCTTGGGTTTAAAAAGCTTATACCTTGGCAGCAATGAATTTTTTGGTGAGATTCCAATCAGTTTAAGTAGTCTTCACAATTTACAAACACTTTCACTTGAGAGGAACAACATCACTGGTGCTATCCCTGAAGAGATTTTAACAATGAGCAACTTAACAAACCTGAATCTTGCAAATAATGAAATCGCTGGAAAGATCCCGGTAAACATTGGTAATTTGTCTGGATTGCAAAGCTTGAATTTGAGCAAGAACGGCTTTTTCGGTAATATTCCATCAAGCATTGGCAAACTAACAAACTTAAAACTTCTTGACCTTAGCATGCAAAGAAATTTATCGAATGTGTTACCAGCAGAGCTCTTCAGCTTACCAAATCTTGAAGTCGTTTCGCTGGCTGATAACTCATTCTCAGGCCCTGTACCAGAAGGCTTTACTAGCTTATCAAACTTGCAGTACTTGAATCTTTCCTCTAATGCATTCTATGGTTCTATTCCACATACATATGGATATCTTGAGTTTCTGCAAGTTTTCTCACTATCAAGAAATAATATATCTGGTTCTATTCCAGCAGAGCTTGGTAATTGCTCTAACTTAACCATAATCCAATTTGATTCAAATCAGCTATCAGGTTCAATACCCGAAGAGCTTTCAAGACTCAACAATTTGGTTGAACTCGATCTCGATCATAATCATATATCCGGTATCATACCCGATAACCTTTCAAACTTATCAAAGTTGCAAAAGCTGGACCTCTCCTCAAACTATCTCACAGGGACTATCCCTCCAAGTCTATCACGCATTACCGAGTTAACATACTTCAATGTATCCAATAACAACCTCGAAGGCGAAATACCCATTATGCTCGCGACCCGTTTCAATGATTTGTCATTATTCACTAACAACTCAGACTTATGCGGGTACCCATTGGAAAACTCTTGTGCGAAGAAGAAGAAGAAGAAGATAAGCACAAGACTGATATTGTTCACCAGTCTCGGACTAGCTATACTTCTATTCATTGGTATACTATGCTGCTGCTGCGCTTACATTCTGTTTAGATGGCGAAGGCGGTTTTTAGATACACGAGGTACTGGAAAGAAGCGAACTTCTGCCAGGGGCAGTGGTTCTAGTACCACGACAAGCAATGGAGAAACAAGAGATTCTAGACTAGTTATGTTCAGCAATAAAATCACCTATACGGAGACTCTAGAAGCTACCAGACAGTTTGATGAAGAAAACGTGCTCAGTCGAGGGCGTCATGGCTTAGTCTTCAAAGCCTGCTACAACGATGGCACAGTCTTATCCATTCTTCGTCTGCCTTCAAAATCAAATGATGGTTCGGTAGTAGTGGAAGAAGTGTTCTTCCGAAAAGAGGCGGAGTCCTTAGGCAAACTAAAGCACAGGAATTTGACAGTGCTAAGAGGATACTATGCAGGGCCACCACCTGATGTCAGACTGTTGATATATGATTACATGCCGAATGGAAACCTGGCTACATTGCTTCAGGAAGCGTCACACCAGGACGGGCACATACTGAACTGGCCCATGAGGCATCTGATAGCTTTGGGTGTGGCCCGTGGGCTGGGGTTTCTGCATGCGAACAACGTGGTACACGGGGACGTGAAGCCTCAGAACGTGCTGTTCGATGCGGATTTCGAACCACATTTGGCTGATTTTGGGTTGGAGAGCATGGTTGTGACAGCTGGTGCAGCTGCTGAAGCGGCTTCCAGTTCGTCCTCAGTGCCCGTGGGCTCGTTAGGGTATGTGGCGCCTGATGCTGCTGCGGCTGGGCAAGCGACTAAAGAAGGGGATGTTTACAGCTTTGGGATAGTGCTGCTGGAGCTGTTAACGGGTAGGAGACCCGGGATGTTTGCAGGGGAGGAGGAGGACATTGTGAAGTGGGTGAAGAGGCAGCTGCAGAGAGGGCAGATTGGGGAGCTGCTTGAGCCGGGTCTGCTGGAGTTGGACCCGGAAAGCTCTGAGTGGGAGGAGTTTCTTCTTGGTATTAAGGTTGGGTTGTTGTGCACTGTGGCTGATCCGGCGGATCGGTTGCCTATGTCCGATGTGGAGTTTATGTTGGATCGGTGTCGTGTTGGACCCGAATTGCCTTCCTCGGCTGAGCCGACTTCTCAGCCTTCTCCTGCTTGA

Protein

>AfisC3G06623
MPPLFFFLLLFLPHISSQTTNSSEIQALLSFKTSLSDPMNSLSSWNPNLPNSPCSWRGIQCNSNLNVVQLRLPRLKLSGPISPSLSSLGFLTKLSLRSNNFSGSLPSSFSQLTRLRSLFLHYNFLTGPISEFAFSNLTNLQVLNLANNHFSGPIPASISSNLRYLDLSSNGFSGNIPSSIHDSSPKIQFLNLSFNKLRGTIPPSIGKFSSLMYLWLDWNLLEGTIPSVLANCSSLLHLSLQGNNLQGIVPVAIGGIRTLQVLNLAHNALSGPVPFSVTGLRIVQLGFNGFMELEEPKLEVQSDIGFVRPNFLQVFNAEENKISGEFPKWLTEFPALTVLDLSGNLLKGSLPKEIGSLTALQELRLGRNSLTGSVPVEIGQCGSLHVLDLENNQFHCKIPVILGGILGLKSLYLGSNEFFGEIPISLSSLHNLQTLSLERNNITGAIPEEILTMSNLTNLNLANNEIAGKIPVNIGNLSGLQSLNLSKNGFFGNIPSSIGKLTNLKLLDLSMQRNLSNVLPAELFSLPNLEVVSLADNSFSGPVPEGFTSLSNLQYLNLSSNAFYGSIPHTYGYLEFLQVFSLSRNNISGSIPAELGNCSNLTIIQFDSNQLSGSIPEELSRLNNLVELDLDHNHISGIIPDNLSNLSKLQKLDLSSNYLTGTIPPSLSRITELTYFNVSNNNLEGEIPIMLATRFNDLSLFTNNSDLCGYPLENSCAKKKKKKISTRLILFTSLGLAILLFIGILCCCCAYILFRWRRRFLDTRGTGKKRTSARGSGSSTTTSNGETRDSRLVMFSNKITYTETLEATRQFDEENVLSRGRHGLVFKACYNDGTVLSILRLPSKSNDGSVVVEEVFFRKEAESLGKLKHRNLTVLRGYYAGPPPDVRLLIYDYMPNGNLATLLQEASHQDGHILNWPMRHLIALGVARGLGFLHANNVVHGDVKPQNVLFDADFEPHLADFGLESMVVTAGAAAEAASSSSSVPVGSLGYVAPDAAAAGQATKEGDVYSFGIVLLELLTGRRPGMFAGEEEDIVKWVKRQLQRGQIGELLEPGLLELDPESSEWEEFLLGIKVGLLCTVADPADRLPMSDVEFMLDRCRVGPELPSSAEPTSQPSPA

Gene

>AfisC3G06623
ACAATTTATTAATTTCACAAAAACACCTTGCAATTCTCCGCCACATCTGAAAACATCTTCTTCAACAATGCCTCCATTGTTCTTCTTCCTCCTCCTCTTCCTCCCTCATATTTCTTCACAGACTACAAACTCAAGTGAAATCCAAGCTCTCCTTTCTTTCAAAACCTCTCTTTCTGACCCAATGAACTCACTTTCTTCGTGGAATCCTAATTTACCAAATAGCCCTTGTTCATGGAGAGGCATTCAGTGCAACTCTAATCTTAATGTAGTCCAGCTTCGTCTTCCTCGTCTCAAATTGTCTGGACCCATTTCTCCATCTCTCTCTTCTTTGGGTTTTCTTACAAAACTAAGCTTGCGTTCTAACAATTTTTCTGGTTCCCTACCGTCTTCATTTTCTCAACTCACTCGACTTCGCTCTTTGTTTCTCCATTATAACTTTCTTACCGGACCCATTTCCGAGTTCGCCTTTTCTAACCTCACAAATCTTCAAGTTTTAAACCTGGCTAATAATCACTTTTCTGGGCCTATTCCTGCAAGCATTTCAAGTAACTTAAGATACCTCGATCTTTCTTCGAATGGGTTTTCTGGAAACATTCCTAGCAGTATTCATGATTCCTCTCCAAAGATTCAATTTTTAAATCTTTCCTTCAATAAGCTTCGTGGGACTATACCTCCTTCTATTGGCAAGTTCAGTAGTTTGATGTATTTGTGGCTGGACTGGAATCTTTTGGAAGGAACAATACCTTCAGTTCTTGCAAATTGTTCCAGTTTGCTACATTTGAGTCTGCAAGGCAATAATTTGCAAGGCATTGTTCCTGTTGCCATCGGAGGGATCAGAACTCTTCAAGTTCTTAATCTTGCTCACAATGCACTTTCTGGGCCGGTACCTTTTTCGGTAACAGGTTTGCGGATAGTCCAGCTTGGGTTTAACGGGTTTATGGAGCTTGAAGAGCCTAAATTGGAGGTTCAAAGTGACATCGGTTTTGTTAGACCCAACTTTTTGCAGGTTTTCAATGCCGAAGAAAACAAAATCAGTGGTGAATTTCCGAAATGGTTGACGGAATTTCCAGCATTGACCGTATTGGATCTTTCAGGTAATTTACTTAAGGGGTCTCTACCCAAAGAAATTGGTTCCCTTACTGCACTGCAAGAGTTGAGACTTGGAAGGAATTCACTTACCGGGTCTGTACCCGTTGAGATTGGACAATGTGGATCCTTGCATGTTCTTGATCTTGAAAATAATCAATTCCATTGCAAGATTCCGGTAATTCTTGGAGGAATCTTGGGTTTAAAAAGCTTATACCTTGGCAGCAATGAATTTTTTGGTGAGATTCCAATCAGTTTAAGTAGTCTTCACAATTTACAAACACTTTCACTTGAGAGGAACAACATCACTGGTGCTATCCCTGAAGAGATTTTAACAATGAGCAACTTAACAAACCTGAATCTTGCAAATAATGAAATCGCTGGAAAGATCCCGGTAAACATTGGTAATTTGTCTGGATTGCAAAGCTTGAATTTGAGCAAGAACGGCTTTTTCGGTAATATTCCATCAAGCATTGGCAAACTAACAAACTTAAAACTTCTTGACCTTAGCATGCAAAGAAATTTATCGAATGTGTTACCAGCAGAGCTCTTCAGCTTACCAAATCTTGAAGTCGTTTCGCTGGCTGATAACTCATTCTCAGGCCCTGTACCAGAAGGCTTTACTAGCTTATCAAACTTGCAGTACTTGAATCTTTCCTCTAATGCATTCTATGGTTCTATTCCACATACATATGGATATCTTGAGTTTCTGCAAGTTTTCTCACTATCAAGAAATAATATATCTGGTTCTATTCCAGCAGAGCTTGGTAATTGCTCTAACTTAACCATAATCCAATTTGATTCAAATCAGCTATCAGGTTCAATACCCGAAGAGCTTTCAAGACTCAACAATTTGGTTGAACTCGATCTCGATCATAATCATATATCCGGTATCATACCCGATAACCTTTCAAACTTATCAAAGTTGCAAAAGCTGGACCTCTCCTCAAACTATCTCACAGGGACTATCCCTCCAAGTCTATCACGCATTACCGAGTTAACATACTTCAATGTATCCAATAACAACCTCGAAGGCGAAATACCCATTATGCTCGCGACCCGTTTCAATGATTTGTCATTATTCACTAACAACTCAGACTTATGCGGGTACCCATTGGAAAACTCTTGTGCGAAGAAGAAGAAGAAGAAGATAAGCACAAGACTGATATTGTTCACCAGTCTCGGACTAGCTATACTTCTATTCATTGGTATACTATGCTGCTGCTGCGCTTACATTCTGTTTAGATGGCGAAGGCGGTTTTTAGATACACGAGGTACTGGAAAGAAGCGAACTTCTGCCAGGGGCAGTGGTTCTAGTACCACGACAAGCAATGGAGAAACAAGAGATTCTAGACTAGTTATGTTCAGCAATAAAATCACCTATACGGAGACTCTAGAAGCTACCAGACAGTTTGATGAAGAAAACGTGCTCAGTCGAGGGCGTCATGGCTTAGTCTTCAAAGCCTGCTACAACGATGGCACAGTCTTATCCATTCTTCGTCTGCCTTCAAAATCAAATGATGGTTCGGTAGTAGTGGAAGAAGTGTTCTTCCGAAAAGAGGCGGAGTCCTTAGGCAAACTAAAGCACAGGAATTTGACAGTGCTAAGAGGATACTATGCAGGGCCACCACCTGATGTCAGACTGTTGATATATGATTACATGCCGAATGGAAACCTGGCTACATTGCTTCAGGAAGCGTCACACCAGGACGGGCACATACTGAACTGGCCCATGAGGCATCTGATAGCTTTGGGTGTGGCCCGTGGGCTGGGGTTTCTGCATGCGAACAACGTGGTACACGGGGACGTGAAGCCTCAGAACGTGCTGTTCGATGCGGATTTCGAACCACATTTGGCTGATTTTGGGTTGGAGAGCATGGTTGTGACAGCTGGTGCAGCTGCTGAAGCGGCTTCCAGTTCGTCCTCAGTGCCCGTGGGCTCGTTAGGGTATGTGGCGCCTGATGCTGCTGCGGCTGGGCAAGCGACTAAAGAAGGGGATGTTTACAGCTTTGGGATAGTGCTGCTGGAGCTGTTAACGGGTAGGAGACCCGGGATGTTTGCAGGGGAGGAGGAGGACATTGTGAAGTGGGTGAAGAGGCAGCTGCAGAGAGGGCAGATTGGGGAGCTGCTTGAGCCGGGTCTGCTGGAGTTGGACCCGGAAAGCTCTGAGTGGGAGGAGTTTCTTCTTGGTATTAAGGTTGGGTTGTTGTGCACTGTGGCTGATCCGGCGGATCGGTTGCCTATGTCCGATGTGGAGTTTATGTTGGATCGGTGTCGTGTTGGACCCGAATTGCCTTCCTCGGCTGAGCCGACTTCTCAGCCTTCTCCTGCTTGAGTTTGGGTTGGCATCGGATCCGATATGGTGTAGTTTGTCTTGTATCGGTGGGGTTGTTTCGGGATGTTTTCCCTCCACTTTTTAGTTGCTTTTTTTGAATTATTTTTTAGTTTTGTTGGCATTGATGATTGTGTTGGGTAAAGTTGACTGGAGTCAAAGGGAGGTGGGGGCCAAAAGAGGGCAGCAGACAGCGCGCCAAAAAGTAGGAAATAAAATAGTGAGTAAATAGCCGTTAGATTGTATTGTTCGAGATGGCTTTTATCTTTGGAGTGTGCTAATTAATGAACGTTCATTTAACATCATGTGGTTCGGAAAGGACAAAGGAAGTGCTGGTGTTCTGTATGTATGTGTGGGCCTGATGAATGAATTATTTATTGTAATAACAGTTCTTTCTGTCCATTTGTCTTGTTAACTTCTTCGAAATGGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919420.2	7.5e-165	probable inactive leucine-rich repeat receptor kinase XIAO
Swissprot	G9LZD7.1	5.3e-155	Probable inactive leucine-rich repeat receptor kinase XIAO
trEMBL	A0A8K0IG81	4.2e-165	Putative inactive leucine-rich repeat receptor kinase XIAO

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36180.1	54.25	0.0	1144		Leucine-rich receptor-like protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06623	AT4G36180.1	1152	466	16	4	1117	8	1136	54.25	0.0	1144
AfisC3G06623	AT1G75640.1	1151	487	18	4	1117	6	1135	52.65	0.0	1068
AfisC3G06623	AT1G17230.1	1093	671	22	22	1099	25	1076	33.49	2e-139	494

Ortholog group

Species	Genes
Allium cepa	g378236.t1
Allium fistulosum	AfisC3G06623
Allium sativum	Asa2G06699.1
Arabidopsis thaliana	AT4G36180.1
Oryza sativa	LOC_Os04g48760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	22	62	45.5	5.9e-12
PF13855.3	LRR_8	Repeat	91	150	34.9	8.3e-09
PF00560.30	LRR_1	Repeat	161	181	10.6	0.65
PF13855.3	LRR_8	Repeat	209	269	34.7	9.7e-09
PF13855.3	LRR_8	Repeat	334	394	27.4	1.9e-06
PF13855.3	LRR_8	Repeat	504	562	29.2	5.2e-07
PF13855.3	LRR_8	Repeat	624	683	38.9	4.7e-10
PF00069.22	Pkinase	Domain	813	1035	104.8	4.3e-30

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0001653	F	peptide receptor activity
GO:0006952	P	defense response
GO:0004383	F	guanylate cyclase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation
GO:0006955	P	immune response
GO:0009506	C	plasmodesma
GO:0009556	P	microsporogenesis
GO:0009611	P	response to wounding
GO:0009741	P	response to brassinosteroid
GO:0009753	P	response to jasmonic acid
GO:0010051	P	xylem and phloem pattern formation
GO:0010234	P	anther wall tapetum cell fate specification
GO:0016043	P	cellular component organization
GO:0017046	F	peptide hormone binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0090548	P	response to nitrate starvation
GO:1902025	P	nitrate import

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network