result

Gene information

Detail information of AfisC3G06655

Location

Gene	Chr	Start	End	Strand
AfisC3G06655	chr3	1188222918	1188226777	-

Sequences

CDS

>AfisC3G06655
ATGGCTAATTCATTCTTTGGAAGCATCGATACCAATCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGCTGTTCAGTCTTCTTCAACTGCTCAACCGAGCTCTTCCTCCACCCCTCTCAAGCGCAAGCGCAATCTTCCTGGAAATCCAAATCCAGATGCTGAAGTAATCGCGCTATCACCAAAGAGCTTATTAGCAACGAACCGATTCATATGTGAAGTGTGCAACAAAGGATTCCAAAGAGAGCAAAATCTACAGCTCCACAGAAGAGGGCACAACTTGCCATGGAAGCTTAAGCAAAAAAGCACTCAAGAAGTCAGAAGAAAAGTGTACTTGTGTCCTGAACCTACTTGTGCTCATCATGACCCATCCAGAGCTCTCGGGGACCTGACCGGCATCAAGAAGCACTATTCAAGGAAGCACTGTGAAAAAAAATGGAAGTGCGAGAAATGCTCGAAAAAGTATGCAGTTCAATCTGACTGGAAGGCGCATTCGAAGACTTGCGGCACCAGGGAGTATCGTTGTGATTGCGGTACTCTTTTTTCGAGGCGTGATAGTTTCATAACACATCGAGCGTTTTGCGATGCATTGGCTCAAGAGCATGCGAGGCTTCCTCCAGTCAGCTTCAACAACATATTCTCAAACAACAGCGGCAGCAACAACATCAACTTAGGCCTCTCTCAACTGAACAACATCAACCCTCACTTGCCATCGCTTCAAATCAACGATCATGGCGCCAACCAAACCTCTTTAGCCGAACAATTAGGTCTTAACTCAACCCAATTCTCATCACACTCCTTGAACTCCTCCGCCTTCAACCCTCCTGGTTCCATCTTCTTCAACCTCTCCAATGGTACAACCAACAACCAATTTCATGATATCGAGGCAAGAAAACCTCTTCACGGCTTGCCACAATTCCAAAATCATCTGAACTTCGATTTCTCTGGAGGTTCAAACCCTAACAACCCAAGCAATTTCTTGATCAACTCTGAGCAAATGAACAGTGCAAACGTAGTCGAACCAATGTGCCTATTTGGAGGAGGAGTTCCATCGCTTTACAACATGAACAACAATAACAACAACAACAGTAGCAGCAACTCGTCGATGCAGAACAATCAAGAAATGTGCTTGCCACAAATGTCTGCAACTGCATTGCTTCAGAAAGCAGCTCAAATGGGTGCCACTAGCAGTGGAGGGTTCGCTACCATTAGTTCTAAAGCAAGCATGAGCACACAAATGGAGAACGAAGCGAATCTCCAAAACTTGATGAACTCACTTGCAAATGGAAATGCAGGTATTTTTGGAGGGTCTAGTGGAGGTCGAGGGTGTGAAGTAGGAAGTGGTTATGACGGTTTTAACCCTAATTTATCGATTGGAGGTGGTGGATCGGATGGATTGACCAGGGATTTTCTTGGAGTTGGGAGTGCGGGTAGAGTTTTGGGAGCAAACGTGTTGGCTCAAGGTGAAAAGCATCATCAAGTTGGGTCGATGGATTCGAGGTCGAGTAGCTTGCCTTTTGGTGGTGGAAGTCTAGAGTGA

Protein

Gene

>AfisC3G06655
AAAAAGTATGACAGGGAATTGAAAGCCATCATTCAACCACCACATCTTTTATTCCCCTTTATGTAAATTCTCTCTTATATATTATCTGATAGAGAAAGAAATATGAAAGCAGAAGCTTCTTTGGAGTTAGGTTTGCTTGCTTGTTATTTTCTTAATTTTTTTTTCTTAACCATGTAAAAATTTCATATGTCTTGTTGCTTCTCACTCTCTCACTTTACTAGCTATAGTTCTGCTCTGTAGATAAATTTGTTCTTTTGTAGATGTAACAATTTTGGAGCTATACAACAAAGATTATACCATGGTCTTCTTCATTTCTTTTCTAATTTGGTTTCTTCCCATTTTTTAATTTTCCTTTGTTGTTGCTGAATACCAAATACATGGATAGATAGAAAGAAACCAAATAGAATTTCTTCTTCTTTCATGTTTTCTAGTGATGAACAATTTCTTTATGTTTCCTTCTGATTAGGACTCGTCAGCGATTTCTTGCCCTAAACTAGAATAAGACCAGAAGAAGAAAAACAACAAGAAGCTACACACCATAATTTTCTTCCAAAGAATTCGTATATAAAAATTTATTACATGGCTAATTCATTCTTTGGAAGCATCGATACCAATCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGCTGTTCAGTCTTCTTCAACTGCTCAACCGAGCTCTTCCTCCACCCCTCTCAAGCGCAAGCGCAATCTTCCTGGAAATCCAAGCAAGCTTCCATCTCAACTTATATTTACTTTTAAACATTATTTTATGTTCTTTACTGACTATACTTAATTAATATTCATTATTTTCAGATCCAGATGCTGAAGTAATCGCGCTATCACCAAAGAGCTTATTAGCAACGAACCGATTCATATGTGAAGTGTGCAACAAAGGATTCCAAAGAGAGCAAAATCTACAGCTCCACAGAAGAGGGCACAACTTGCCATGGAAGCTTAAGCAAAAAAGCACTCAAGAAGTCAGAAGAAAAGTGTACTTGTGTCCTGAACCTACTTGTGCTCATCATGACCCATCCAGAGCTCTCGGGGACCTGACCGGCATCAAGAAGCACTATTCAAGGAAGCACTGTGAAAAAAAATGGAAGTGCGAGAAATGCTCGAAAAAGTATGCAGTTCAATCTGACTGGAAGGCGCATTCGAAGACTTGCGGCACCAGGGAGTATCGTTGTGATTGCGGTACTCTTTTTTCGAGGTAATATTTGATTAATTATACTTTTAATCATTATTTTGAGAAAGAATAAATTTAGGTTTAGGAGAGAATGTTTAGGGTTAGGGTTTGTTAGGAATATCCCTTTTTTTTTACTGGTGACAGTGAAACTTAAATTTGTAACTGTATGCACGTGAATTTTATTCATGTTGGCCTTAGTTTTTTTCGCCAGTGTGATATTTTCTAGGTTTGGAGAAAAACGTTAGAAAAAAATAAATAAGAAAGTTGCTTATCAATTCATTCTCTCACATCAGTTCACATTTCACATGTGTGTAGCTTATGAGTTTGTTTTATTGCTTGTTGGCTAGTTGTGTTTATTTCTATTGTTTCTGGTTTATTCTTTTTACCTTGTATATAATTACAAAATTTTACTCCTTTTTTTTACAAATGAGTGAAGTACTCATTGCTCAATCATTAATGGTTTCAGTACTTTAATTAAATTTGTGAGAATATACATTGATTGAAGTCATAGGAAATGGTTCATTTATTGATTGATGGATATGAAACTGAAGGAATTATAATTAATAGGTTGTTGACATGTTTTTTGCAAAATTCTGTTTCTCATTGAATGAAGAGACAGTGCTGGAAATGTGGTTTTACAATTGACATTCAAGGATTATTTATCTGTTTTTCAATTTATAGGGGAATTTTTTCTGACAACTTCAAAAAATTTCTTACTGTATTGAGTTTCTTGTGGACCAAAACTTTGCTTTTTCATGTGTTATATAAGTTAGATCCTACTTACTATATATGTATGTAAATTTGTATGCATATCTATATATGTATATCATTGAGGCATGCATTTACCAATTTTCTGGAATATAAGTATAATATTTATTTACTCTTATTTAATTTATAGAAACCAAGTATTAGTTATATGTCATGCAAGTTTACGGGTGTATAATGCAAAGTTTATAGAGACCATGTACAGCGCTTAAAAAGGATAGCTATGAATAGCATTGGAAAATCATTGTTTTTATGAAGCTTCACTAATCTTACCTATAATTTTTAAGCTTTGTTAGTTTAAATTAAAATACTAGTCAATAGATTCGTACTTAGTTGTACATAATCCTTCATGAAAGTAACTAATTGACTTTTTAACTTGTCCTATTTTGGTTAATCGCTAAAAATAAGCAACTAAAGTATAAACAAGGAATTTGTATACAACATAATTAATCTATCTAGTTTTACAGATATAAAATAAGAAATCATTAACATGCAATAAGATGGTGCATATCTTTTATTTTATTTTTATTTTGAAACTCAGTAGTTGAAGTCTAAAGTTTCAAACACAATATCTTTGACTATGGTGCAAAGACCTTACATTTCTCTAAAATAGTCTTCAATAACTGTATATTAATATATTCTTGAAATTCATTAGATCTAAATCCTTACAAAATTACTAACATGTTTCATTCAACTTCAACAGGCGTGATAGTTTCATAACACATCGAGCGTTTTGCGATGCATTGGCTCAAGAGCATGCGAGGCTTCCTCCAGTCAGCTTCAACAACATATTCTCAAACAACAGCGGCAGCAACAACATCAACTTAGGCCTCTCTCAACTGAACAACATCAACCCTCACTTGCCATCGCTTCAAATCAACGATCATGGCGCCAACCAAACCTCTTTAGCCGAACAATTAGGTCTTAACTCAACCCAATTCTCATCACACTCCTTGAACTCCTCCGCCTTCAACCCTCCTGGTTCCATCTTCTTCAACCTCTCCAATGGTACAACCAACAACCAATTTCATGATATCGAGGCAAGAAAACCTCTTCACGGCTTGCCACAATTCCAAAATCATCTGAACTTCGATTTCTCTGGAGGTTCAAACCCTAACAACCCAAGCAATTTCTTGATCAACTCTGAGCAAATGAACAGTGCAAACGTAGTCGAACCAATGTGCCTATTTGGAGGAGGAGTTCCATCGCTTTACAACATGAACAACAATAACAACAACAACAGTAGCAGCAACTCGTCGATGCAGAACAATCAAGAAATGTGCTTGCCACAAATGTCTGCAACTGCATTGCTTCAGAAAGCAGCTCAAATGGGTGCCACTAGCAGTGGAGGGTTCGCTACCATTAGTTCTAAAGCAAGCATGAGCACACAAATGGAGAACGAAGCGAATCTCCAAAACTTGATGAACTCACTTGCAAATGGAAATGCAGGTATTTTTGGAGGGTCTAGTGGAGGTCGAGGGTGTGAAGTAGGAAGTGGTTATGACGGTTTTAACCCTAATTTATCGATTGGAGGTGGTGGATCGGATGGATTGACCAGGGATTTTCTTGGAGTTGGGAGTGCGGGTAGAGTTTTGGGAGCAAACGTGTTGGCTCAAGGTGAAAAGCATCATCAAGTTGGGTCGATGGATTCGAGGTCGAGTAGCTTGCCTTTTGGTGGTGGAAGTCTAGAGTGAGAATGAGGAGTAGTTTTGAGAAGTTGTTATAGTTATGAGCATGAAAATGAGCATGCATGGACCTAAGGTAGAACTTAATTATGTGTTAGTTGGTTGTTGTTGTTTTAGTTTTATGTTGTTTCCTTAGTTTTATAATAGTTTAAAGTTGAAGTTGAGAAATGCATAAGGTGATGTTAGCTAGAGAGGTGTAAAACTCTTTCGTCTGTTTGAGGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010904556.1	8.1e-98	protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZWA6.1	1.6e-71	Protein indeterminate-domain 3
trEMBL	A0A6I9Q7Z2	5.8e-98	protein indeterminate-domain 5, chloroplastic

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02080.1	50.10	2e-102	370	AtIDD4;IDD4	indeterminate(ID)-domain 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06655	AT2G02080.1	491	154	18	27	477	41	480	50.10	2e-102	370
AfisC3G06655	AT1G03840.1	476	196	12	39	473	40	492	45.38	1e-95	347
AfisC3G06655	AT1G14580.2	188	35	1	22	208	34	221	80.85	5e-94	342

Ortholog group

Species	Genes
Allium cepa	g524002.t1
Allium fistulosum	AfisC3G06655
Allium sativum	Asa2G05240.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12171.5	zf-C2H2_jaz	Family	69	91	24.3	2.4e-05

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005783	C	endoplasmic reticulum
GO:0005634	C	nucleus
GO:0007029	P	endoplasmic reticulum organization
GO:0008270	F	zinc ion binding
GO:0008356	P	asymmetric cell division
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009590	P	detection of gravity
GO:0009705	C	plant-type vacuole membrane
GO:0009937	P	regulation of gibberellic acid mediated signaling pathway
GO:0009958	P	positive gravitropism
GO:0009959	P	negative gravitropism
GO:0009965	P	leaf morphogenesis
GO:0010029	P	regulation of seed germination
GO:0010031	P	circumnutation
GO:0010051	P	xylem and phloem pattern formation
GO:0010075	P	regulation of meristem growth
GO:0010150	P	leaf senescence
GO:0010168	C	ER body
GO:0010431	P	seed maturation
GO:0010601	P	positive regulation of auxin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0016298	F	lipase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032527	P	protein exit from endoplasmic reticulum
GO:0042803	F	protein homodimerization activity
GO:0043621	F	protein self-association
GO:0045604	P	regulation of epidermal cell differentiation
GO:0046982	F	protein heterodimerization activity
GO:0048364	P	root development
GO:0048444	P	floral organ morphogenesis
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	P	photoperiodism, flowering
GO:0051302	P	regulation of cell division
GO:0052689	F	carboxylic ester hydrolase activity
GO:2000012	P	regulation of auxin polar transport
GO:2000904	P	regulation of starch metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network