result

Gene information

Detail information of AfisC3G06886

Location

Gene	Chr	Start	End	Strand
AfisC3G06886	chr3	1231164734	1231168283	-

Sequences

CDS

>AfisC3G06886
ATGGCCATCAAAATCCACAAATTAGGAATCCTTTTTTTCACTATTTTAACCATTAATCATTGCTATTGTGCTTACACACCTCCCGACAACTACTTAATAAACTGTGGCTCTTCTTCAAATACAGTAGTCGGTACCAGAACCTTCTTAGCAGATTCACCGCCGTCAGTCATCATAACACCATCAAATCAAGTATTCGCCAACTCTTCATCAAACTCAGTGTCACAACTTTACCAAACAGCTCGAATCTTTACAACCCCTTCATCATATACCTTCCCAATGAAAAGCTCTGGTCGCCACTTCATCCGCCTTTACTTCTTCCCCTTCAAATACCAAAACTTCAACCTTCCTAGCTCCGTGTTTTCCGTAACCACCCAAAACGTCACGCTCCTCAACAACTTCAACCCAAAATCCACCTCCACCTTCCAAGAATTCTCGGTGAATGTCACCTCAGATACCCTCATAATTACGTTCACGCCATCCTCATCATCTTCCCCTGCCTTCATAAATGCCATAGAAGTCGTCTCTGTCCCCGACAACCTAATAGAAGCCGATGCCCAATCCATAAACATGGGACCTTACTCTAACCTAAACCAACAAGCTTTGCAAACAATGTATAGGGTCAACATGGGGGGGCCTTTAGTAACTCCCGACAACGACACCCTCTCTCGAACTTGGGAAAACGACCAAAAGTACCTTCTAAACCCTAAAGTAGCACAATTTAAGAATACCTCAGGTGACATTAGCTACCCTCCAGGAGGAGCCGACGAACAAACTGCTCCTGAAATCGTGTATGCTACTTGCACCGAGTTGGAAGCAACAAATGTAAGTGCAGCGATGTTTAACGTTACATGGCAATTCAATGTTGATGATAGTGATACTACTTTGTACCTAGTTAGGATGCATTTTTGCGACATAGTGAGTAAATCAGCGTCTGATGGTCTATTGTTCAATGTGTTCATCGGTAGCGCTTATGCTAAGCACGATTTGGAGTTGTCGCAATTGACGCTCAATTCACTTGCTACGGCCGTTTACATCGATATGGTGGCAAAAGTTAATGATGGGTCGGGCAAGCTTAATGTGAGTATTGGGCCTTCGACTACTGACCCGAGCACTTCGCCAGATGGGATCATGAATGGGCTCGAGATCATGAAAATTGTGAACATGTCTTCGACGAACGTTGTTGCACCATCTAGGTCAAAGGGTAGTTTAGGAACTATATTGGGTTGCATTTTCGGTGTGCTAGGTTTGGTGGTTATAATTGTAATTGCTGTGTTCATGGTGAAAAAGAAAAGGAAGGAAGCGAAGAAGCAACACTCGAAGACGTGGCTACCGTTCTCGGTCAATGGGATGACAAATCATAGTGTAGGAAGCATCCTTTCGAACGGAACGGTTTCTTCGGGTCAAAACACAAGCTACCGTTTTCCATTCGTGGTGGTGCAAGAAGCTACTAACAACTTCGATGAGAATTGGGTTATAGGAGTGGGTGGATTTGGAAAAGTGTATAAAGGTACTCTAAGGGACGATACGGAGGTGGCGGTTAAGAGAGGAAACCCTAAATCGCAACAAGGCTTGAACGAGTTTAGAACGGAGATCGAGCTTCTTTCTAGGTTACGTCATAGGCATTTGGTTTCACTTATCGGGTATTGTGATGAAGGCAATGAGATGATACTTGTTTATGAGTACATGGAGAAAGGCACGCTCAAGAGTCATTTGTACAACTCGGATTATCCGAATTTGAGTTGGAAGCAGAGGTTGGAGATATGTATAGGATCTGCAAGAGGGCTACATTATCTGCATACGGGTTCATCTACGGCTATCATTCACCGAGATGTTAAGTCTGCTAATATATTGCTGGATGAGAATTTACTTGCTAAGGTTGCGGATTTTGGGTTGTCAAAAACAGGACCCGAGTTGGACCAAACCCATGTTAGTACGGCTGTGAAAGGTAGTTTCGGGTATTTGGACCCGGAATATTTCAGAAGGCAACAACTGACTGAAAAATCGGATGTGTACTCGTTTGGAGTAGTGCTGCTAGAAGTGCTTTGTGCTAGACCCGTTATAGACCCGACTCTTCCTAGGGAGATGGTGAACTTAGCGGAGTGGGGGTTGAAGTGGATAAAGAGAGGGGAGCTGGATCAGATAGTGGATCAACGGATAGCGGGTACGATAAGACCCGATTCGTTAAGGAAGTTTGGTGAGACGGTCGAGAAATGCTTAGCGGATTATGGAGTTGAAAGGCCGACCATGGGAGATGTGCTGTGGAATTTGGAATATGCGGTGCAGTTACAGGAGGCTGATTCCAGTGCTTCAGAAGTGAATAGCATCAATAGAATTGTAGAGCTGTCTTCTCAGGTTCAGAATATCGGAAATATCGAGAATATGAACAACAGGAGTAGTGGTAACAATGCAGTGCCGGATGACTTGTCAGATGTTTCGATGAGCCGCGTTTTCTCGCAGTTGATCAAATCAGAAGGGAGGTAG

Protein

Gene

>AfisC3G06886
TTGTTACTTGCTGTTTCTCGTATGAACAGAAAAGTTGGAGCTCCACTCAAAGTTATTAATACCATCTTTATATTATATTTTTATATTCTGAATAAGATAAACTCTTTATTTATTTTTCATATATTTTATTATATTTATTTTTTGTTGTCAAATGTATGCTGAGAATTTATTAGCTGTCTCGAATATCTTGCACTCTAGCCCTCGTTATCATTAATAATCATCCAAACAGCCTCTTCTCCAACTATTACTTCATTTTGCTCCATTCAAAAGAATCAAGCAGCAGTTCTCTTGCTTTTTTATTGACTCAGATCCCTTCTTCGTTTCTTCTGCAACCTCTTTCCATAATAAAATCTACAGCCAATTTCGACCGTGTCAGTTTGCAGCATCAAGCAACGATTAGGGTTCATTTATGGTAAATCAAGTCGACTGTATCAGTTTGCTACATCAAACAGTAATTAGGGCTCATTCATGGTAAATCAAGTCGAATATTCTCAAAAGGTTACATCTTCATCTTCATCTTTCGTTTGATCTATTTTGTAGTCAAGTAAGAACTCAAAATCTGCCATTGTCTTGTTATTCATCGTTACTCCAGGCATGGTTGCTGTGGGTTGAATTCGATTTGTTTGGTTTTATAACCTAAAGTTATTCTGCCTCAATTTGTTGCCTTTTTCAGCTAATTTGACATGGCCATCAAAATCCACAAATTAGGAATCCTTTTTTTCACTATTTTAACCATTAATCATTGCTATTGTGCTTACACACCTCCCGACAACTACTTAATAAACTGTGGCTCTTCTTCAAATACAGTAGTCGGTACCAGAACCTTCTTAGCAGATTCACCGCCGTCAGTCATCATAACACCATCAAATCAAGTATTCGCCAACTCTTCATCAAACTCAGTGTCACAACTTTACCAAACAGCTCGAATCTTTACAACCCCTTCATCATATACCTTCCCAATGAAAAGCTCTGGTCGCCACTTCATCCGCCTTTACTTCTTCCCCTTCAAATACCAAAACTTCAACCTTCCTAGCTCCGTGTTTTCCGTAACCACCCAAAACGTCACGCTCCTCAACAACTTCAACCCAAAATCCACCTCCACCTTCCAAGAATTCTCGGTGAATGTCACCTCAGATACCCTCATAATTACGTTCACGCCATCCTCATCATCTTCCCCTGCCTTCATAAATGCCATAGAAGTCGTCTCTGTCCCCGACAACCTAATAGAAGCCGATGCCCAATCCATAAACATGGGACCTTACTCTAACCTAAACCAACAAGCTTTGCAAACAATGTATAGGGTCAACATGGGGGGGCCTTTAGTAACTCCCGACAACGACACCCTCTCTCGAACTTGGGAAAACGACCAAAAGTACCTTCTAAACCCTAAAGTAGCACAATTTAAGAATACCTCAGGTGACATTAGCTACCCTCCAGGAGGAGCCGACGAACAAACTGCTCCTGAAATCGTGTATGCTACTTGCACCGAGTTGGAAGCAACAAATGTAAGTGCAGCGATGTTTAACGTTACATGGCAATTCAATGTTGATGATAGTGATACTACTTTGTACCTAGTTAGGATGCATTTTTGCGACATAGTGAGTAAATCAGCGTCTGATGGTCTATTGTTCAATGTGTTCATCGGTAGCGCTTATGCTAAGCACGATTTGGAGTTGTCGCAATTGACGCTCAATTCACTTGCTACGGCCGTTTACATCGATATGGTGGCAAAAGTTAATGATGGGTCGGGCAAGCTTAATGTGAGTATTGGGCCTTCGACTACTGACCCGAGCACTTCGCCAGATGGGATCATGAATGGGCTCGAGATCATGAAAATTGTGAACATGTCTTCGACGAACGTTGTTGCACCATCTAGGTCAAAGGGTAGTTTAGGAACTATATTGGGTTGCATTTTCGGTGTGCTAGGTTTGGTGGTTATAATTGTAATTGCTGTGTTCATGGTGAAAAAGAAAAGGAAGGAAGCGAAGAAGCAACACTCGAAGACGTGGCTACCGTTCTCGGTCAATGGGATGACAAATCATAGTGTAGGAAGCATCCTTTCGAACGGAACGGTTTCTTCGGGTCAAAACACAAGCTACCGTTTTCCATTCGTGGTGGTGCAAGAAGCTACTAACAACTTCGATGAGAATTGGGTTATAGGAGTGGGTGGATTTGGAAAAGTGTATAAAGGTACTCTAAGGGACGATACGGAGGTGGCGGTTAAGAGAGGAAACCCTAAATCGCAACAAGGCTTGAACGAGTTTAGAACGGAGATCGAGCTTCTTTCTAGGTTACGTCATAGGCATTTGGTTTCACTTATCGGGTATTGTGATGAAGGCAATGAGATGATACTTGTTTATGAGTACATGGAGAAAGGCACGCTCAAGAGTCATTTGTACAACTCGGATTATCCGAATTTGAGTTGGAAGCAGAGGTTGGAGATATGTATAGGATCTGCAAGAGGGCTACATTATCTGCATACGGGTTCATCTACGGCTATCATTCACCGAGATGTTAAGTCTGCTAATATATTGCTGGATGAGAATTTACTTGCTAAGGTTGCGGATTTTGGGTTGTCAAAAACAGGACCCGAGTTGGACCAAACCCATGTTAGTACGGCTGTGAAAGGTAGTTTCGGGTATTTGGACCCGGAATATTTCAGAAGGCAACAACTGACTGAAAAATCGGATGTGTACTCGTTTGGAGTAGTGCTGCTAGAAGTGCTTTGTGCTAGACCCGTTATAGACCCGACTCTTCCTAGGGAGATGGTGAACTTAGCGGAGTGGGGGTTGAAGTGGATAAAGAGAGGGGAGCTGGATCAGATAGTGGATCAACGGATAGCGGGTACGATAAGACCCGATTCGTTAAGGAAGTTTGGTGAGACGGTCGAGAAATGCTTAGCGGATTATGGAGTTGAAAGGCCGACCATGGGAGATGTGCTGTGGAATTTGGAATATGCGGTGCAGTTACAGGAGGCTGATTCCAGTGCTTCAGAAGTGAATAGCATCAATAGAATTGTAGAGCTGTCTTCTCAGGTTCAGAATATCGGAAATATCGAGAATATGAACAACAGGAGTAGTGGTAACAATGCAGTGCCGGATGACTTGTCAGATGTTTCGATGAGCCGCGTTTTCTCGCAGTTGATCAAATCAGAAGGGAGGTAGAGCTTGCTTATTTATTGTGTTTTCTTGATTATAAATTTTATTAGCTTGATATGGTTTATTTCGGTGTATGTTCCACTTTCTTTGATCATTGATTGTTGTCTGTGTTTACTATGATAGGCCAATGCATGATGTGATAATAACTATTTCATTCTTGCATGTTGGAATGTAATTTTTGGGTGATGCTTATGTTATTTTTGTTTAGGGTTGAACTCCCGAATTATATAATAGGATTATTCAAACACCAACCAGTCTTTGGATTCTATATATGTAGTTAACGATCGACGACTTTTGAATGTTGGTTATGTTTTTTTGTTTGATTTTATGTAGTGGGTGTGATTGATGAGAGGTATTAGAGTTGTTGGAGTATCGTCTATGGTTTTGTTATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273884.1	4.4e-303	LOW QUALITY PROTEIN: receptor-like protein kinase HERK 1
Swissprot	Q9LX66.1	3.0e-248	Protein HERCULES RECEPTOR KINASE 1
trEMBL	A0A6G1CWN6	2.9e-288	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G46290.1	57.65	0.0	928	HERK1	hercules receptor kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC3G06886	AT3G46290.1	843	327	16	1	826	1	830	57.65	928
AfisC3G06886	AT5G59700.1	839	337	13	6	826	4	829	56.14	872
AfisC3G06886	AT5G54380.1	853	387	19	10	826	11	855	49.47	765

Ortholog group

Species	Genes
Allium cepa	g536037.t1
Allium fistulosum	AfisC3G06886
Allium sativum	Asa2G05666.1
Arabidopsis thaliana	AT3G46290.1; AT5G59700.1
Oryza sativa	LOC_Os03g17300.1; LOC_Os03g17300.2; LOC_Os03g17300.3; LOC_Os03g17300.4; LOC_Os05g06990.1; LOC_Os06g22810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12819.4	Malectin_like	Domain	33	385	132.3	1.9e-38
PF07714.14	Pkinase_Tyr	Domain	491	685	163.4	5.5e-48

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0050832	P	defense response to fungus
GO:0004672	F	protein kinase activity
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009705	C	plant-type vacuole membrane
GO:0009723	P	response to ethylene
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009860	P	pollen tube growth
GO:0010483	P	pollen tube reception
GO:0016324	C	apical plasma membrane
GO:0030308	P	negative regulation of cell growth
GO:0043680	C	filiform apparatus
GO:0046777	P	protein autophosphorylation
GO:0051510	P	regulation of unidimensional cell growth
GO:0051924	P	regulation of calcium ion transport
GO:0080147	P	root hair cell development
GO:0090404	C	pollen tube tip
GO:0097275	P	cellular ammonia homeostasis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network