result

Gene information

Detail information of AfisC3G06891

Location

Gene	Chr	Start	End	Strand
AfisC3G06891	chr3	1232385502	1232389360	+

Sequences

CDS

Protein

Gene

>AfisC3G06891
ATGTTATCTTACGTCAACTGTAGGTATGCGAAAGAAATTCTTCAAAAAGAGATGTTACCTCACGTTGGTGTTGGGGAATATTGTGAAACCAAGAAAGCATATTATTTTGGGTAATCTACAGCCTTCATCGATATATAAATAAAGTTGCTAAACTATTGGTAGAGGACAATGTCTAACATATGTTATGATTTTTGATAGATATATCATTCAAAGACTATTGCTTTGTGCACTGGGTCGGAGACCGGAAGATGACAGGGATCATTATGGAAATAAAAGACTTGACCTTGCTGGTCCATTACTTGGTGGTTTGTTCAGACAGGTCTGTTTTCTTATGGACATTTGGATATAAGGATATTTATATTAATCTTTTCACAGTACTTGCTAACATATATTTTTGCCCTTTTCAGTTGTTTAAAAAATTGACAAGAGATGTACGGTCTTATGTTCAAAAGGTTGGTACTCAAATGCATGTGTACATGTTATGTGTCAACAACTCACTGGTTGCTGTAATTTTTAACAGTGCATTGACAGTGGGAAAGATGTTAATTTGCAATTCGCAATTAAAGCCAAGACTATCACAACTGGTCTGAAGTATTCCCTTGCTACGGGAAACTGGGGAGCTGCTAATAATGCTGGTACCAGGGCAGGGGTTTCACAGGTAAATTTGTTTTCTACGTTTGTCTTGTGCAACCTTTTTTGTCTCTCTTTCTCAAAATTCATCATTTATTTTGACGTGATAGGTGCTGAATCGCTTAACATATGCATCAACTCTTTCTCACCTGCGGAGGCTGAACTCTCCTATTGGTCGAGAAGGTACTTAATTATTTAGCATTCGATTATCATCATCTGTATGAAAAGCAATTATTCTGATGGAAGAATAATGTACATAGGAAAGTTGGCAAAACCTCGCCAGCTTTATAATTCTCATTGGGGAATGATGTGTCCTGCTGAAACACCCGAAGGACGGGTAGGATAGTTTGATAAACAATGATCTTACTAAATGTGGTTACTTTTTAAGTATAATTGATACTGTATAGCACACGTGCTTGGGAAAAAAATACAGCGTTTAGATAATGCATGTTCAGCCTAGATATAAAAGCAAAGAGATATTGTCCAGCACAATCTGATTACATATTCAAACTTGCTATTATCCATTCTTACATTTCTTTTTCTTTTCTGTGTGTGCGCAAGGCTTGTGGGTTGGTGAAAAATCTTGCCTTGATGGTATATATTACCGTAGGATCAGCTGCTAATCCGATATTGGAGTTTCTAGAGGAATGGAGCACCAAAATTTTTGAGGTATATATATATATATATTTCTGATGCCTTTGATGCTTGCAGTTCTCAAGTCATATTGGTGCTGATTGTTATTAAGGTCGTGCTATTTTCATGTTGAGTTATATACAAAAAATGTACTGTTCTCTCGTCATTTCAGGAAATATCTCCCGGTGTTATTCCTCAGGCAACTAAAATCTTTGTCAATGGTTGTTGGGTTGGCATTCATAGGAATCCCGACTTACTAGTGAAGACATTGAGACAATTGAGGAGACAGGTACCTCTAATGTTCTCATTAGTGGCAATGCCATCTTTATATGTATGCATATATAAATGTTTGTTGTTTCCTTGTTGGTATTAGCCTGAACTTTCCACATACTCATCATTCCTCTTCTTTGCCCAATGCACAAGTTCCTCAATATTTCAAAAGAAAGTTGGTTCCCCCAATGTTTCTGCTGTGTTTTAGGTTCAAATATTTTAAACTTTGTGCTTTTATCACTTCAGCACTGTCCCACTCTATGTTTCATGATGAAATGGTTATCTCATAACACAAGTGCTTACATAAGGAATTTTATCTAGTTCACCCAAAATTTCTTCTTTTTGCAAGCATTGCACACTCCATATGGCATGCCTGTGAGCTAGCATCGTTGGAGACAAGTATGCTTATCATTTACTTCTATCTAATCGATATAACTTAATCATTGGGTAAAAAACTTACATTGCATTATGTGCCTACGCCATCAGGAGACAGATGTGGTGTCCTGCACACTAGGGCTTGCATACGCTATATTTCCAAATTAATATGCTAACTGAGAATTTACCAATTGATGTTCTAATCTAGATGTTATTTTTTTTCAACATCAAAGGGGATTAACGGTGATAAATTGGAGAATGCAGTGATACCCTAAACAGCACAATTTTTTTTCCTGCTTTCTCTAATTACATTTAATTTTAGGTGCAGTGCATGGAATTGTATATACAAATATATCTAGTAAAGTAAGCTGCTGTAACTTCTATTTCTTTATTGAATTCCAGATTGATGTGAACACTGAGGTAGGAGTTATCCGAGACATCCGTCTTAAGGAATTACGACTATATTTTGCGTTGATGACAATAAGGTTTATATCTTGACAACTGAGTTGTCGACCCTTTATCAACCCTATTGGGCCTGTCCTTTTGATATATTTTTTTGGGTCTCTGTCTCAAACGTTTGTTTGAGGGGGCCAACAAAGTTTTGTAACCTGCAATCTCAGTGTTGCATTATCACATCAGACAAAGTAGCATTAATTATAATAGTTTACAAGTCTGGGAGGAGCATAAAATCATGGAAGCTGAACAAATATAAAAGGGAGCGGCACTTAGCTTGGTATTTTGAACCACGGTCAATATTAATCGAAGAAATAACTCAATCCTTGTGAAATTAACAATAATAGGGATGTAGTAAGTATGGATGCAAGAGGCTCTATAAGAAGTAAACAAATTCTAACAAACAGTCAAGTTCTCTCACGTACATCCCAATTTCAAGCTAATCTGGTCCCCCGTGCAAGTTTGTCTCGATGGATATTTTTATATCATATGCTTTTGCCACCAAATGAAATTTACTATTTTTTGTATAGCTCGTAATACTCTATACTTAGGCGAATACAGTAGTGGCTTTCATTGTTATTTATAATAAAATAGTTAGGACTTGTGGGAATGCAGCATTGAAATCAGTGATAATGGAGAACTATAGTACTATTGCATGTCTTAACTTCTGATATGTAACTTTTGGACATTGTACCTCTGTGGTACTGGAAGTGTTTCCTTTTTCTATAAGGCATTTGGCTTTGCATTCTCTTTCTCTATTTTTGCGTCATCAGTTCAATTTTTATATCATTAATAAATTTCTAATGTTAATCATTTCCTTTTACAGGAAGGCAGTCACAATACTCATTTTTGTTTGCCCCAGGTAATGTAGAAGTGGAATTGGAATGGATATATAACCCAGTCTAGATTGGCTTGCCAAACTAATGATATATTCTCAAATTCATGTCTATATTTAATTTCATTATAGACACTTACTGTGCACGTATAGTATTATCTTACTGTGCACATATTATGTTTACCATTGCAAAAATAATGGTTTGGACAAGTTCCACCAAGATGTTTTCATTTATATTACAATTAATATTTTTTAAAATATTTACAACTCAACTGTACATAATTACCCAAAAGAGAAAGAGCCTTTAGGCCAAAAATTAGATTATCAGTGTAATCTTCTATATATAATAGCGGATATTGCTAGTGGCATTATGCAATAATAGTAATGTTTTGTATAAATATTGATGTTTAATTGTTGAGCAGAATTCATCTCAGCTTAGGAAAATTCCAGTTGTGATAGTGTCTTCTGAGAACATTCCAAATAACATCAACCGGTATGATCAAAGCTATAATTAATAAAATTCCAAGGGTTAAATGTTAAAAGGTTGTGTGTTCTGAAATTTTGGAAATGGAATGCAGGTGCTTGGAAGAGGGAGCAGAGGATTTCTTGCTGAAGCCAGTTAAACCGTCAGATGTGACTAGGTTGACACGTGCGCTGCGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	MQL72789.1	5.1e-124	hypothetical protein
Swissprot	P38420.2	3.9e-121	Protein EMBRYO DEFECTIVE 1989
trEMBL	A0A1D1YAY8	3.7e-124	DNA-directed RNA polymerase subunit beta

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21710.1	89.32	1e-121	432	EMB1989;NRPB2;RPB2	DNA-directed RNA polymerase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06891	AT4G21710.1	234	25	0	9	242	372	605	89.32	1e-121	432
AfisC3G06891	AT5G45140.1	255	156	5	7	244	338	592	32.16	3e-33	139
AfisC3G06891	AT3G23780.2	234	162	3	9	240	374	606	29.49	5e-23	105

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G06891
Allium sativum	Asa6G00447.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04561.11	RNA_pol_Rpb2_2	Domain	9	36	34.6	1.3e-08
PF04563.12	RNA_pol_Rpb2_1	Family	36	83	40.3	2.1e-10
PF04565.13	RNA_pol_Rpb2_3	Domain	109	173	86.9	6.5e-25
PF04566.10	RNA_pol_Rpb2_4	Domain	208	239	35.0	1.2e-08
PF00072.21	Response_reg	Domain	258	296	24.4	2.2e-05

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000784	C	nuclear chromosome, telomeric region
GO:0001055	F	RNA polymerase II activity
GO:0001172	P	transcription, RNA-templated
GO:0003677	F	DNA binding
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0046872	F	metal ion binding
GO:0005665	C	DNA-directed RNA polymerase II, core complex
GO:0006283	P	transcription-coupled nucleotide-excision repair
GO:0006367	P	transcription initiation from RNA polymerase II promoter
GO:0006368	P	transcription elongation from RNA polymerase II promoter
GO:0006370	P	7-methylguanosine mRNA capping
GO:0008543	P	fibroblast growth factor receptor signaling pathway
GO:0009506	C	plasmodesma
GO:0031048	P	chromatin silencing by small RNA
GO:0031618	C	nuclear pericentric heterochromatin
GO:0032481	P	positive regulation of type I interferon production
GO:0032549	F	ribonucleoside binding
GO:0035019	P	somatic stem cell population maintenance
GO:0042795	P	snRNA transcription from RNA polymerase II promoter
GO:0044822	F	poly(A) RNA binding
GO:0045087	P	innate immune response
GO:0050434	P	positive regulation of viral transcription

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network