result

Gene information

Detail information of AfisC3G07095

Location

Gene	Chr	Start	End	Strand
AfisC3G07095	chr3	1270506079	1270508717	-

Sequences

CDS

>AfisC3G07095
ATGGAGAAATTTGCAATGGGAAATAGCTTGAGATCTTTGAACAATCTTTACTCGACTTCAAACCAAGTGAAATCTGCGGTTCATGAAAATGAACTCATGGAGGCTTTGTGGAAGAATGGTCCCATGAACATGGTTATGCAAAGTGAAATGAATCGAAAACCTGCACAAAGTGTTGCTGAGCTTGGAAGAACTCAAATTCCAAACTTTGTTTGTTCAACAATTCCCCCGAATTTAGTTCAAGAAACTGATAATTTTTCTTCTTACTCACTTGGCGATGCTTTTGAAAAAGATTTTTCCTCAGAAGTACTGCTTTCTGATTTTCCCAGTGAAACTAGCGATGAAAGCCACACAAACGATACAAATGTGCAATTTATTGATTCATCCGAAATTGGTAATGCCTTTATAATGTCTCCTCTTAATGATTTTGGAAATGGCAAACACAAAGGTTTTTCTGACTTCTCCAAGCCAATAAGAAAGAGTGTATCATCTTCGTTAACTAATTTAATAACAAGTGTTAGCGGGGCAAATCAAAGTCTCGTTGGTGATGATGCAAAAAAATGTGGTAAATTTATTTCACCACTTGAAAAATTGCAAAACAACCCTCTTGCTGCTACTTTGACATCATCATCGGGTATCTCTGAGTGCTATTTAGGTCCGAAAAGCACAAGTAAAAGTGTACATAAAAGGAAGGAAAGAGATGGAGAAGAACTTGATTCATATAAACAGGAGGCAGGATATGAATCAAGTGAGCCTGATAAAATATGTGGGAGACACACCCGTAAAGCTCGTGCGGCTGAAGTTCATAACTTGTCAGAGCGGAGAAGAAGAGATAGGATCAATGACAAGATGAAAACATTGCAAGAATTACTTCCACACTGTAACAAGACAGACAAAGCATCGATGCTGGATGAGGCAATAGAGTATTTAAAGTCACTGCAACTACAACTTCAGCTATTGTGGATGGGAAGTGGCATGGCACCAATGATGTTTCCAAGTATGCAACAGTACATGTCTGGAGTAAGCATGGGAACGAGTCATGCTTCTTCTTTGCCTTCTATTGATTACACAATTCAATCATCGAGAACCCCACAGGTTAATAATATTATACCAGCAAGTTCTTATAATTTCCCCACTCAAATGCAAAATATCCAGCTTCCAGCAGGATCATATGCCCCGTATCTCCAATTCCCTCACATGCAAATGCCTAACCAGGGTATGAATTTACATTCATATGTATCTCAACACATGCAGAATCAGACGATATCCTTTGCAGGAAACAGCAACTTGACTACAGCTGGTGTTTCCATGCAAAATATACCAAATGGTAGATAG

Protein

Gene

>AfisC3G07095
ATGGAGAAATTTGCAATGGGAAATAGCTTGAGATCTTTGAACAATCTTTACTCGACTTCAAACCAAGTGAAATCTGCGGTGTAAGTTTCAATTAACTTTAAATTCTTGCAAGGATATACTCGTATACTTGTACAGCCAGCGTTCTTATCTTACTACATATTTTAATTTCGTTTTTTCAGTCATGAAAATGAACTCATGGAGGCTTTGTGGAAGAATGGTCCCATGAACATGGTTATGCAAAGTGAAATGAATCGAAAACCTGCACAAAGTGTTGCTGAGCTTGGAAGAACTCAAATTCCAAACTTTGTTTGTTCAACAATTCCCCCGAATTTAGTTCAAGAAACTGATAATTTTTCTTCTTACTCACTTGGCGATGCTTTTGAAAAAGATTTTTCCTCAGAAGTACTGCTTTCTGATTTTCCCAGTGAAACTAGCGATGAAAGCCACACAAACGATACAAATGTGCAATTTATTGATTCATCCGAAATTGGTAATGCCTTTATAATGTCTCCTCTTAATGATTTTGGAAATGGCAAACACAAAGGTTTTTCTGACTTCTCCAAGCCAATAAGAAAGAGTGTATCATCTTCGTTAACTAATTTAATAACAAGTGTTAGCGGGGCAAATCAAAGTCTCGTTGGTGATGATGCAAAAAAATGTGGTAAATTTATTTCACCACTTGAAAAATTGCAAAACAACCCTCTTGCTGCTACTTTGACATCATCATCGGGTATCTCTGAGTGCTATTTAGGTCCGAAAAGCACAAGTAAAAGTGTACATAAAAGGAAGGAAAGAGATGGAGAAGAACTTGATTCATATAAACAGGTTACTAATATATTTTTATTTTAAGCTTAGGATAGTTTGTTACATGATTATTATTCAAAAATAATAATTAAAAAAAAAAAAAATTTTCGTTGTAGGAGGCAGGATATGAATCAAGTGAGCCTGATAAAATATGTGGGAGACACACCCGTAAAGCTCGTGCGGCTGAAGTTCATAACTTGTCAGAGCGGGTAATTTTTTTCTTGATCATCTTTGCAAGGATATTAAAATTAATGTTGTTGCTATCTCTTACTGAACTTATGATGACTTTAATTAATTTACGCAGAGAAGAAGAGATAGGATCAATGACAAGATGAAAACATTGCAAGAATTACTTCCACACTGTAACAAGGTCCATTATAATACACTGGAAAAATAACCTTTATATAATAACATTTTCACCTCCATTTATGTTCTTTTTTTTTTTGTCACCCTGCATGGACAGCATATAGCAAGTGGAATTCGTATCAACATAGCCAGCATTTTATGTTTATTTATTGATATTTTCGTTTTTACACAATTTTGCAGTTATATATACATGCTAAGAACAACTGATTCAAAACCTTCAACTTTAGTCACCCAATGATATATCTGAAGCATGTGTAGAGTTTTCAGTGCATATTCCTTCGAAGTTTACTTTATTAAGCTTGGCTCTTAGGGATTTCAAAGATGCCTTATCTCTATAACAGAATTTTCTATTATGTAACACAAATTGTCAAAAAATTACACCGTGTATCAGGAATGAAAATTAGAAGAGAGCTTTGGAAGGATATATCTGATATTTCATATGTGTAATACAGAAGTCGCTTGTGTTACGACTTATAAAAGACAACTTTTTTCTGATATATGAATACATCAATATTTTGCAGACAGACAAAGCATCGATGCTGGATGAGGCAATAGAGTATTTAAAGTCACTGCAACTACAACTTCAGGTTCAAAATAACCATGATACATCCACTGGCTCGTATTTAAGTTAAAAACCTAACACAACACAACATGTAAAACCCTTGTTTGTTTTATTATCAGCTATTGTGGATGGGAAGTGGCATGGCACCAATGATGTTTCCAAGTATGCAACAGTACATGTCTGGAGTAAGCATGGGAACGAGTCATGCTTCTTCTTTGCCTTCTATTGATTACACAATTCAATCATCGAGAACCCCACAGGTTAATAATATTATACCAGCAAGTTCTTATAATTTCCCCACTCAAATGCAAAATATCCAGCTTCCAGCAGGATCATATGCCCCGTATCTCCAATTCCCTCACATGCAAATGCCTAACCAGGTTTGTGGTCCTTTTCATTTATTAGTTAATCTTCATATTGGTATGTGTAGAATTTTAACTCACTATAAATAATAATTATGTAGGGTATGAATTTACATTCATATGTATCTCAACACATGCAGAATCAGACGATATCCTTTGCAGGAAACAGCAACTTGACTACAGCTGGTGTTTCCATGCAAAATATACCAAATGGTTAGTTAATCAAATTTTTGTTTAGCCTCCTTTTAAAGTAAGTGATAATCTGAAGTCACTTTAAAATCTATTCCACAGGTAGATAGAAGATTATTATGGCGTTGGTGCTTTCACTGTACGTTCTGCAAAAAAACATATTTGTATTATCAAAATATCAAACCACAGTACTGCATGCATGCATGTATTTATTATGATCCGCATTTATCATGGACTTGATGAAGCTTTGTAGCCAGTAGCCACATAATTTGTCAATCTCAATGATTTCTATTTTGATTTTCATTTGAAAATGTTGATATTGAACTGCAATTATTATTATCCTTTGTATATGTCAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK74413.1	3.9e-72	uncharacterized protein A4U43_C03F5960
Swissprot	Q10CH5.1	2.9e-32	OsPIL1
trEMBL	A0A5P1F9J8	2.8e-72	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20180.2	33.56	1e-37	154	PIF1;PIL5	phytochrome interacting factor 3-like 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G07095	AT2G20180.3	432	227	12	12	396	21	439	33.56	1e-37	154
AfisC3G07095	AT2G20180.2	432	227	12	12	396	21	439	33.56	1e-37	154
AfisC3G07095	AT2G20180.1	288	132	8	160	419	114	382	37.85	3e-34	143

Ortholog group

Species	Genes
Allium cepa	g324974.t1; g465113.t1; g523729.t1
Allium fistulosum	AfisC3G07095
Allium sativum	Asa0G03798.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	267	313	55.0	5.3e-15

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009536	C	plastid
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009585	P	red, far-red light phototransduction
GO:0009641	P	shade avoidance
GO:0009693	P	ethylene biosynthetic process
GO:0009704	P	de-etiolation
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010047	P	fruit dehiscence
GO:0010161	P	red light signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010244	P	response to low fluence blue light stimulus by blue low-fluence system
GO:0010600	P	regulation of auxin biosynthetic process
GO:0010928	P	regulation of auxin mediated signaling pathway
GO:0031539	P	positive regulation of anthocyanin metabolic process
GO:0048440	P	carpel development
GO:0048767	P	root hair elongation
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16189	PIF4; phytochrome-interacting factor 4	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network