result

Gene information

Detail information of AfisC3G07874


Location
GeneChrStartEndStrand
AfisC3G07874chr313986941881398748444-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020242367.10.0e+00CHD3-type chromatin-remodeling factor PICKLE
SwissprotQ9S775.10.0e+00Protein GYMNOS
trEMBLA0A804IUP40.0e+00(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G25170.155.240.01482CHD3;CHR6;CKH2;EPP1;GYM;PKL;SSL2chromatin remodeling factor CHD3 (PICKLE)

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain41846134.31.4e-08
PF00385.21ChromoDomain48052032.74.6e-08
PF00385.21ChromoDomain55660353.61.3e-14
PF00176.20SNF2_NFamily670944212.75.5e-63
PF00271.28Helicase_CFamily970108364.68.5e-18
PF06465.10DUF1087Domain1207125764.37.1e-18
PF06461.8DUF1086Domain12881419155.94.9e-46

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0000166Fnucleotide binding
GO:0000790Cnuclear chromatin
GO:0000792Cheterochromatin
GO:0000978FRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980FRNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001103FRNA polymerase II repressing transcription factor binding
GO:0001221Ftranscription cofactor binding
GO:0003678FDNA helicase activity
GO:0016020Cmembrane
GO:0046872Fmetal ion binding
GO:0005737Ccytoplasm
GO:0005665CDNA-directed RNA polymerase II, core complex
GO:0005730Cnucleolus
GO:0005813Ccentrosome
GO:0006974Pcellular response to DNA damage stimulus
GO:0007051Pspindle organization
GO:0007423Psensory organ development
GO:0007517Pmuscle organ development
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008285Pnegative regulation of cell proliferation
GO:0009506Cplasmodesma
GO:0009733Presponse to auxin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009739Presponse to gibberellin
GO:0009788Pnegative regulation of abscisic acid-activated signaling pathway
GO:0016581CNuRD complex
GO:0021895Pcerebral cortex neuron differentiation
GO:0031492Fnucleosomal DNA binding
GO:0032993Cprotein-DNA complex
GO:0035093Pspermatogenesis, exchange of chromosomal proteins
GO:0036091Ppositive regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0040027Pnegative regulation of vulval development
GO:0042826Fhistone deacetylase binding
GO:0043967Phistone H4 acetylation
GO:0044822Fpoly(A) RNA binding
GO:0045111Cintermediate filament cytoskeleton
GO:0045595Pregulation of cell differentiation
GO:0048557Pembryonic digestive tract morphogenesis
GO:0051297Pcentrosome organization
GO:0060218Phematopoietic stem cell differentiation
GO:0060850Pregulation of transcription involved in cell fate commitment
GO:0061628FH3K27me3 modified histone binding
GO:0065008Pregulation of biological quality
GO:0070062Cextracellular exosome
GO:0072359Pcirculatory system development
GO:0090571CRNA polymerase II transcription repressor complex
GO:0098532Phistone H3-K27 trimethylation
GO:1901798Ppositive regulation of signal transduction by p53 class mediator
GO:2000023Pregulation of lateral root development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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