result

Gene information

Detail information of AfisC3G08055

Location

Gene	Chr	Start	End	Strand
AfisC3G08055	chr3	1430720246	1430722160	+

Sequences

CDS

Protein

Gene

>AfisC3G08055
ATGCCGAGCCATGTGGCTGATGGAGACAGTGTGGTGGCTGAAACGGACTTTGAGGCTAGCAGGTACATGTTCACCACTCATTGTATCACTTATAAATCTGAAATACACTACAGTTTTTCAATTTCTTTGTTAGTGAAATAAAAGATTTAGGCTTTTGGTTTTAGCTTTAGTAAATTCTTTTACATATGTTTTGATTTTGTGACTATATTTCACTTAAAATTAACGTTATTTCAATTTAATCCGAAACTGAGATTGGAAAAAATTGTTATTCTATTCCCACTTTGTTGAAAAACTCCAATATTTTGGATGGTTTATAAATTGGATTACCAATACATATCAAATTGTATAACAGATTTTTCCAAAGATCAACGTGACTTTTTCTCTGACTATATTCAACATATTTTCTTAAATTAGTACACTTTTGATCAATCCCTTTTGGTCTGAAATAAACAATGTCCAAAATGTATTTAAAATCTCAATCTATGATTATTACCTTATAGTTTCTTGGACAATTTCTGGACCAACTGCCTTATAATTTCTTCCAGTTTGTGAAGTACATAACATATCCAAAGGACGTTGATGCATATGGAGCCAACAGTTATTCCATTCAATATTCATATAGTTATTTCAAGACTTCATAAGAAAATCGTAGGAAATGATGTAACTTTTTAATGCGCATGAAAATTACAAATGCAATGTTACAATAGTAGAAAACAATAACAGAAAAATTACTCTTTAAATTGCTTAAAGAAAAGTAAGCATTAACTAAAATTTAAAGGATGTTTTGTGTCTATCACTTTATTCAGATTTGTTAGTAAGCAAGATTTTTCAGTTGAATGGGAAGCACTATTGTGAATTTAATTATGGTATTGCATTTCTCAAATTTTCAGTTCACGTTGAAAGCCATTTAAATTGCACATATCATTTTTACAACAACAAATTATATTCAACGTACTTAATGTTCCCTCCATACTACTTGGTGCTTACTTGGCTATAATTTATAGGCTTCTTAGAAAATAATGGTATGTTTATTTACTTTACAATGCAAATCATTGTAGTTTAGTTCAACTTTCATTGGACTCACACTAAAAAACGGAAACAACGAACAATGCAAATCAAATGCTTCATTTTGATGTCTGAACTCCGTTTAACTCTAGATCGGACATTATTATACTGAATTAGTTTAAAAATATCAGTTCGTGTTCTGAAATTAGCTTCATTTATATCTTATGTGCACCATTTGCACATAATTGATAAAAGCTTATTCATTGAATTATAATTGTACATCTAATTATATTACAATCAAAATATTTAGAGCTTTTTTAACAAATTCGCCACTATGGATACTGATGTATTTAGACGTGTTGTTTAGCAGCTACATCACAAGTATTATATTTATGTTAAAGAATGTATTTGGTCTACCTTGAAAAGTACTGAAAAGCTAAAAGTAGAAACAAAATGTAAGCTGGCATAAATGTTAATACTTACTTTTCAATGCTACTCATTGCTATTTTGGCAGTGCAAAAAAAGAAATTTATTCAAATATTCTTTGCACACTTCCATCGGAATTGCCTTCGTACCGATCTATATAATATGGCATATACTTACTTGGTGAAGCCTTTTTCAAACTTCCAAATCTACCATTTCATTCGTTTTGGAAAGAATATTATTAAAAAGGATTAAGTTTTCTAATGAAAAGGGCTAAATTTAATATTTTTCATGCTATATAGAAATGGCTTCTTGATTTCAGTGTTTGTGTTAATGCAGGATTGAAACTTCTGGAGTAATTGCCAGGGCGAAAGATTTATTTAAACGACACTGGGACTTAATCCTTGGTTTTAATACTTTCTTACCAAAAGAGTATGAGATTAAACTTCCTATGAAAAGAAAACAGTCGAATTTGGGGAAGCCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_027359739.1	5.0e-11	paired amphipathic helix protein Sin3-like 4 isoform X3
Swissprot	Q9XIE1.3	7.1e-10	Paired amphipathic helix protein Sin3-like 5
trEMBL	A0A8B8LTY2	3.6e-11	paired amphipathic helix protein Sin3-like 4 isoform X4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G59890.1	69.05	2e-11	64.3	SNL5	SIN3-like 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08055	AT1G59890.4	42	13	16	57	73	114	69.05	2e-11	64.3
AfisC3G08055	AT1G59890.2	42	13	16	57	73	114	69.05	2e-11	64.3
AfisC3G08055	AT1G59890.3	42	13	16	57	73	114	69.05	2e-11	64.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02671.18	PAH	Repeat	16	49	30.0	4e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006952	P	defense response
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006468	P	protein phosphorylation
GO:0009941	C	chloroplast envelope
GO:0043531	F	ADP binding
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network