result

Gene information

Detail information of AfisC3G08109

Location

Gene	Chr	Start	End	Strand
AfisC3G08109	chr3	1442481426	1442485890	+

Sequences

CDS

Protein

Gene

>AfisC3G08109
ATGACGGACCTAGACTTGAACACCGAACCAAGAGCATACCGAATGGAACTGAAAATGAAAGGGAAGACATATATTTACGGATTGGTTCATGGAGCATCCATAAAAGCCCGCCTTTTAGCTTATGAGCTATGTTTTGTGGGGGCAAGTGTTATGGGCAGTTTCACCCATAAGGTCACAGCTCGAAAAGTAGCCGAGGGAAGGCAGAGGAAAGGTGAGATGGAAAGATACAAGGAGATTGAGAGGGACAAGGGAGTTAGAAGGAGAAACACCGTCCTTTTTTAGCAGTCAAGGCACCAAACAAGAAATACTGTTTGGTACCCAAGGCACCAGACTTGATTTCCTGTCCAGTAGGCTAAATACCATACCTAGAAGCGATGAGGTGCGAAGATTAAACCAAGGCATGGAGAGGCGTAGCCAAACCGTTCATGCGTACTTAAGAACCTAGTCAATAAGCCGTCCATGTACATCAACTGAACCAAGCTTTCCAATCGAATCGAACATGTTATATATAGAATGAAATCTGGATATATTTGAAAATTAATGATCATATCTTCTACATATGGAAATATTTGATTCGGGAAAATTATACATGGAAGTTGCTGGATTTGCCAGAGTAAATCCCTAGCCTTTTTACCCCTATAAATATCCAAGCATTTGGCATCCATGTGGATAATTTTTTAAACTTCAAGACTCTACTATACAGAAATAGCCAAACCAAGCTCCTAGGTTACCATATTCAATCATGAATGGTTGTATTACATATCAAAACTCTTGTAAAAGCTGATATATAAGAAAAGAAATAAATGAACAGTGGACCTAGGCCCGTTATGGCTGAACCATTATAAATTTACATGTCACTTACTTTTCCAGTATTATATTTTCTTTTGAATCTGTTGTTAGTTTCATTGGAGGTGTTTGTCCATTTTTAATGCAAACAACAACAAAGAGATAAATGACGTAAAAAAGTAATCTTAGCAAGGAGCAACTGCTACTAAATATATTTGATAGTAGAAGTTGAACGCTATGAAAAGTGTTTAAGCTCGTCAGCATAAATGTTATATATGTATTAACAACATCCACTAAATTCTATTAAAATTGTACTTTTTACAGCATTTATACTATTCTTATGGTATGTTTTTGACCTATAATGACATGTCGTTACACATGCGTAGTTAAAAACGTCGTTAAATCCTTTTGCAGCGGTTTTAAAACTTTGTTAAAGGTCCAGTTTGTTGTTGGTGAATCCACACACACACTCCATAATCAAGACATAACGGTTATTTACAATTCCACTACAACAAAAATACCCTATTACAACGTCCTTTTTACAACGGGCATTGGTTGCCCGTTGTAATAGAAGGCTATTACAACGGTCCATTTGCGCCCGTTGTAAAAGATGTCATATACAAACCCTTTTTACAACGGGCATTGGTCGCCCGTTGTAATAGCTATTACAACGGTCCATTCAGGCCCGTTGTAATAGATGCCAAATTTACAACGGTCACATGCCCGTTGTAATGCATGCCCGTTGTAATAAAACTTTAGCCGGGCCAACATCAAATACTAAATCACTATTCTTTTTTTTTTATTTTCCGGCCGCATTGTTGTGAAAAATGGCGTTCGTCCTCTTTGCCAAAACTAGGGTTTTTTGAGAATTGAGGTGCCGCTTCAATTTGTTGCTGATGCTTCGACATGCGAAATCATTTCTTCTCCTTGGGCACGTGAAATCATTTCTTCTCCTAGGGAACGCGAAATCAAATCAAGTTTCGCGATTTCGATTTCGCTCCGCCTCCTTATTATTCAGGTACGAATCTTCTTTTTGTATAACCCTACTTTCGCGATTCGGATTTTCGCGATTTGGATTTTGGGTAGCCTATTTCCTTCGGATTTTCGGATTTTCGCGATTCAGGTACTCATTTGATTGAGAAGTTATTTGCAAATGGGAAGCCTATTTCCTTTGTTAACAAGTAGAAGTTCGAGATTGTGTCTTCAAATCTGTATATGCTCGCGACTTCTTCTATGTAGATGTCGCTACGACATCAAAGATGAGAGGAGTAGTTGGTAGATCTGGAGTTGCTGAGGCCGAGACCAGGGGTTGTTTAAGCGTTTATGCTCACGTCAATCTAGGTTGTGTTGATGGGAAGATGCTTTTCCTTGCTCACTATCGTAGATCGTAAATCTGAAGTTGTGAGTGGATCTGAAGCTATCGTCTTAAAAGTTGCCAGCTGCCTTGAGACGAAAATTGGAGTTGCTTATGTCATTGGCATCTGAGTGAATGTTGTTTCTATCTATGCTGAAAAGATGAAGTGGAGTTTCCTTGGAGTTGTATTCTAGAAAGCCATCACCTTTGCTGGAGATGCTCGAGGTGAGTTTGAATCCGATCTCTTAATGAAGCTAATCATATCTAGATGAACATACTGCTTTCGTGGCACTTTCTGGTGGTGCTCTACTGCCTTCGAGGTATTGTCAAGTACATTGACTTTGTCTGTTTGAACTTTGCAAGTTGAACTATGATGTTTTGTTGCTCTTGTTTTCATGGAATAGATTTATTACTTAGCATGGTTTGGTGACGATGAAGCCTGCGTTGGTTGTTAAGGTGGCATGCTGGTGTTATATTGAGATATATTGAATACGATGATGCAGATTTAGGCTGACGGTGATGCTAATTAGAGATCACTATGCTGCCATAGGAAATTTTGTTCTTTGATTGTTGAAGTTGTTGTTGCATTGAGCTAGTCACAGATAGAGAAGAAAAAACTCCAGCTAAGGAAGAAACTGCAGTATTGTTTGAAAAGCTTAAAGCTATATGATTGCACCTTTAAGCCTTTGTTATTCAGTTTTGACAGTTGCATTAATGTTTCGTCCTTCTGTTCCTTAGTAATGAAGTCTTATTAGATTATACATAGGAGGGCACGTATGAAACAAAGAGGGACCAGAATATACTTTTCTTCTTTCTATTCCTTCTTCACATGAAATGTATACAGAACCAAACATTCACCTTTCTTCTCTACATGAAAGTTGCATACACCTTTCTTTAAGATACGCAGAACACATTTCTTTTTCAATTTTTTTATTGTTCTTTGAAATGGAGACACATTTAGCACGCATGAAACAAATACGTTTTTACACTTTTTCCTCCCCATGAAACACACGCACGCACATTTCGAAATAAAGACACACACATGAAACAAAAGGAAAAACATATACATTTTCACCTTTCTCTCTACTAAACAAAAAGAACACAGCAGGCCAAAGATGGGCTCATTTTTTTACATTTCCATTTTACATGAAAATGAAAATACGCATATATTTTATTGGAAAAAATATATGTGGTTAAATTTTCTTGTTTGAGTGAATGCTTGGTGGGTATGCAAGTGGTGTGTGATTATAAACAACTCCCGTTCACACCACCTCTACCAATTATAGCCCGTGAGAATTTTAAGGCTTATTGTGTATTGAAAATAAAAAAGTTGTACAGATTTGACTTATGTCCGTATAAGTACATTGAGAATATAGCGACACTTGAAGCTGTTTTATTTTTTGCACCAGATTGGCTCAACTTTTAACCAATTAAATTCACCTTGACTTCTATAGATGGAATAACTCATCTTTCTTAATGCACCTAAAAATATGTTCGTACATTCTAAAAAATAAAGTTTATTTTTAATCCAAGTCATCTGAAAATTGATCTTTGGATCACTTTTACTGAAAGCTTTGTCCATATATTAAGTTGTAAGGGGTAATACTAACAATAAGTTACGAAATTAATCATTCCTCCAACCTTTTCAAAAGGCTCCCTTTCAAATAGAATGGGTACTATTTTCTTACTTGATATATCTATATACATGTATCTTTCTATATGTTTCCAGTTACACGAAAAATGGTTTAAGTTTATTTATGACCTTAATTATGTGCTGTCATCCACTTGATTGGTTGGCTTCAATCCTTATATCTTTTACTCTATTAGTTTTTAATCTCCTATTACTAAATTCAGCAGGGGTTGAAGAAGGCGAGGAGGTGCTGGTCGCCGGAGCTTCATCGGTGTTTTGTTGCTGCCCTTCAACAACTCGGTGGTCCTCAAGGTAAAAATTGCATCTTTATTTTGAAATTTACAAAAGAAAGATGACTTTTTTAACTTTTTGTTATTTGTCTTGTAAATGCAGTGGCTACTCCGAAGCAGATAAGGGAACTGATGAAGGTTGATGGCTTGATCAACGATGAAGTTAAAAGCCATTTAAAGAAATACAGATTGCATACAAGAAGGGTAGTACCAAATACGACAAGTGCCGCTATGAATAGAAGCTCTGTTATGGTAACAGGAGATTTATGGACTAATGGTGAGAATTATACAAAGTCGCATCAATCAGGGTCGCCACAGGGACCTTTTCAGATGAACTCGTGTTCTCGAGCAATGTCTGATAGCTGTGAAGATGATGGCAAGTCAGAGAGCTGCAACTGGAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	4.2e-40	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q9FX84.1	7.4e-26	Protein HRS1 HOMOLOG 6
trEMBL	A0A8B8ZEF4	1.7e-35	myb family transcription factor EFM-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G49560.1	53.85	2e-30	129		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08109	AT1G49560.1	143	46	6	83	209	186	324	53.85	2e-30	129
AfisC3G08109	AT2G03500.1	100	35	2	85	184	229	326	63.00	7e-30	127
AfisC3G08109	AT1G13300.1	105	37	3	75	176	168	269	59.05	7e-28	120

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0009507	C	chloroplast
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010629	P	negative regulation of gene expression
GO:0010638	P	positive regulation of organelle organization
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0043565	F	sequence-specific DNA binding
GO:0044710	P	single-organism metabolic process
GO:0044763	P	single-organism cellular process
GO:0048449	P	floral organ formation
GO:0048831	P	regulation of shoot system development
GO:0051093	P	negative regulation of developmental process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0055062	P	phosphate ion homeostasis
GO:0080022	P	primary root development
GO:1901566	P	organonitrogen compound biosynthetic process
GO:1901699	P	cellular response to nitrogen compound
GO:0090701

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network