result

Gene information

Detail information of AfisC3G08185

Location

Gene	Chr	Start	End	Strand
AfisC3G08185	chr3	1453640652	1453641835	-

Sequences

CDS

Protein

Gene

>AfisC3G08185
ATGGGCGCTCTCTCTCTTATTGTACACAGCATCTTCTATCTCTTCTTTTCCATTTCTACGCACACTTCCTCTTTATCATCATTCTATCAAGAACCTTCTTGCTAGGGCAAAACACTTCAACAAAACTAACAAACATGGAGTTCACAAATGAAAGAAGAAGAGAAGAAAAGGAAAAAGAAGCTCTCAATGCATCATCTTCGTCAACACCGGAAGTAGTCGAAAAAGAACACATGTTCGACAAAGTCGTAACTCCTAGCGATGTAGGCAAGCTCAACCGCCTAGTCATCCCTAAACAACATGCAGAAAAGTACTTCCCTTTCGATACCTCCGTTCACGAAAAAGGCTTGATCCTAAACTTCGAGGACAGGACCGGAAAGCCGTGGAGGTTTCGCTACTCATACTGGAACAGCAGCCAGAGCTATGTGATGACGAAGGGATGGAGCCGCTTCGTGAAGGAGAAGAGGCTGGATGCGGGGGATACGGTGTCCTTCATTCGTGGGGTACGTGAAAAAGACAGGTTCTTTATAGACTGGAAGCGAAGGCCTGAGATGGTGAACGTGCATCCTAGGATCCCCATGCATTTTAATCGGGTGAACTACCCTATGGTTTCATTTGGTTCGCCTATGAGCTACATGTACAACGGTGCTAATGGTGCTGGTGGTGGTGGTCAGTATTTGTATTTCAGACAGGCAGTGGTTGCACCACCGCGTGCTGTTTGTAGTAGCGTTCCGATCGTGTTAGAGTCTGTGCCAGTCGTGCAAGGTCAGGTTTCGGCTAAGAGAGTAAGACTTTTCGGTGTGAATTTGGATGAGGAGTCAAGTCGTGGTAACTGTTCGGAGTTTTCTTCTTCAGCTTCTCCTTCTCCAAGGGGTAAAGAAAGTGAAGAATTATCCCTAGATCTTGAGATGTGAATGAAATGACCGAAGTTTTTTTCCTTTTTCCGTTTTTTTTTCTTTTGCATATATTTGGAGAAGTTTCATTACTACGTGACTATCGGATAGATTTAGGGTTGAGTTTTTTGAATTCTTTTTCTTTAATTTGAAAAAAAAAAATGGTTCAGAAGTTGTTGATTTCTTAAGCAATTATCATCATGAGTTTGTAATCAATTGGGTTGGGAAAAGAAAGATAGAAATTAATTTAGGTTTCATTCTGAATATTTTGTTCCAAATGTAAGTAGATATGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010934031.1	9.2e-66	B3 domain-containing protein Os02g0683500
Swissprot	Q6EU30.1	9.3e-55	B3 domain-containing protein Os02g0683500
trEMBL	A0A6I9S658	6.6e-66	B3 domain-containing protein Os02g0683500

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46870.1	52.03	2e-55	212	NGA1	AP2/B3-like transcriptional factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08185	AT2G46870.1	246	83	10	9	225	9	248	52.03	2e-55	212
AfisC3G08185	AT3G61970.1	231	88	6	9	225	3	223	51.52	1e-54	210
AfisC3G08185	AT1G01030.1	243	77	8	29	225	51	292	48.97	2e-53	206

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	34	136	96.6	5.8e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009910	P	negative regulation of flower development
GO:0010073	P	meristem maintenance
GO:0010358	P	leaf shaping
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network