Detail information of AfisC3G08244


Location
GeneChrStartEndStrand
AfisC3G08244chr314653075321465313831+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008785104.22.2e-109transcription termination factor MTERF8, chloroplastic-like
SwissprotQ9FK23.11.8e-95Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15
trEMBLA0A8B8ZT222.5e-110transcription termination factor MTERF8, chloroplastic-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G54180.153.431e-99 360PTAC15plastid transcriptionally active 15

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag110425.t1
Allium fistulosumAfisC3G08244
Allium sativumAsa2G06793.1
Arabidopsis thalianaAT5G54180.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02536.11mTERFFamily99400153.36.6e-45

Gene Ontology
AccessionOntologyName
GO:0003727Fsingle-stranded RNA binding
GO:0005739Cmitochondrion
GO:0006351Ptranscription, DNA-templated
GO:0008380PRNA splicing
GO:0009507Cchloroplast
GO:0009508Cplastid chromosome
GO:0009658Pchloroplast organization
GO:0019843FrRNA binding
GO:0032502Pdevelopmental process
GO:0042255Pribosome assembly

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15032MTERFD; mTERF domain-containing protein, mitochondrialEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.