result

Gene information

Detail information of AfisC3G08258

Location

Gene	Chr	Start	End	Strand
AfisC3G08258	chr3	1466832672	1466837876	-

Sequences

CDS

>AfisC3G08258
ATGTATGAAGATTGTCAAGTACTGTCAACGATGGCTGGATCATCGAATGACGACAACTCACTCATTCCCCCCGATGCTTTGTTTTCAAACCCTAATTTTGGGTTTATGAGCAATATGGCCTTCAATCCATTTTCGAATATAGTCCCTAAGGAGGAGGAAGGAGGAGGGATGATGATGATGATGAGGTCCAAGATGGAGGAGGAGCTGAGTGGATCCGGCAGCGGAGGACACGTGGATGGCATCAGCTGCGGCGAAGAGAACGAAAAGGATGACATGGTGCTGCGCGGCAACGGACCTGACGGCAAGAGGAAGCGCTACCACCGCCATACTGCTCGTCAGATTCAAGAAATGGAGGCGGTGTTTAAGGAATGCCCTCACCCAGACGACAAGCTGCGATTAAAGCTGAGCCAAGAGTTGGGACTTAAACCACGTCAAGTCAAATTCTGGTTCCAAAACAAACGTACTCAGATGAAGGCACAACAAGATAGGACTGACAATGCGATACTCAGTGCTGAGAACGAATCCCTTAAAAATGACAATTACAGGCTTCAAGCTGCACTAAGAAACGTGATGTGCCCTAATTGTGGCGGGCCTGGCATTCTTGGAGAAATGTCATATGATGAACAACAGCTCAGACTTGAAAATGCCCGCCTCAAAGATCAGCTAGAACAAATGTCTTGCTTTATCTCTCGATACACAGGCCAAGTTCAGATGCAATCTTTGGGGTCTACACAGTCTCTGATGATGCCATCACTAGAGCTCGATATGAATACTTATTCAAGGCATTTCAATGACCAACAACAAGCAATGGGAGTTTGTAATGATATAGCTCCAGTTCAAAATAGTGTTTTGATCATGGATCAAGGTAAAGGATTGGCCTTAGATTTGGCTTTTACAGCATCTGAACACTTACTGAAGTTATGTACAATGAATGAGCCTTTGTGGGTTAATAGTAATGGGGGAATTGTTAATGAAGTCTTGGATTATGAAGAGTATAAGACATTGTTTAATTGGCCTGTTGAACTTAAGCAACAAAGTGAAGGAGTTAGGATTGAAGTCACAAGAGATAGCGGGATTGTTATGATGAATAGCATTACTTTGGTTGATGCCTTCTTCAATGCTAATAAGTGGTTGGAGTTATTTCCTACTATTGTGAGCAAAGCGAAAACGTTGCAAATTATTGCTGAAGGGATATCTAGTCATGGCAACGGCTCTCTTCATTTGATGTTTGCGGAGTTTCAAGTTCTATCACCATTGGTGCCTCCACGCGAGGCTCACTTTCTTAGATATTGTCAACAAAACGTTGATGAAGGAACTTGGTTGATTGTTGATTTTCCTATTGATGGATTTCATGGACTCGAAATGTCCCTGACTCGTTATAGAAGGCGACCATCTGGATGTATCATTCAGGACATGCCTAATGGTTATGCTAAGGTGACGTGGGTTGAACATGGAGATGTACAAGATACCCAAGTCCATCAAATATTTGGCAAACTTGTTAACAGTGGTGTTGCCTTTGGTGCAACGAGATGGCTCTCCCTCTTGCAGAGGCAATGTGAAAGACATGCTAGTCTCATGGCTCAAAATATTCCTGACCTTGGAGTTATTCCATCTCCGGAGGGCAGAAAGAACATGATGAACTTGTCACAAAGAATGATAAGAACATTTTGTGCAAACATAAGTTCGTCCAACAACCAATCGTGGACTGCGCTGTCTGAATCATCAGATGATACGATCAGAGTCACAACTCGAAAGAATACAGAACCTGGCCAGCCTAATGGAGTTATTCTTACTGCAGTCTCTACAGTTTGGCTTCCATTTTCACACAGTCAAGTGTTTGAGCTTTTATCTGATGAGCAAAAGCGAACTCAGCTTGATGCACTTTCATATGGAAATTCATTGCATGAGGTGGCTCACATTGCAAATGGTTCCCATCAAAGGAACTGTGTTTCCCTTATGCGCATAAATGCACCAAGCAACTCATCGCAGAACGTGGAACTACTACTGCAAGAGAGCAGCACCCACGACCTTGGTGGCAGCATCGTGGTCTATGCCACGATCGACGTGGACGCGGTCCAGATCATGATGAGCGGCCAAGATCCATCCTATGTCCCTCTCCTCCCCACCGGATTCGTAGTCCTGCCCGCTCCTTCCTCCCACCCCACCGACGTGGGACACACATCCGGTACTGGGTGCCTTCTCACGGTCGCGATGCAGGTCCTCGCTAGCTCGATCCCGTCCGCCAAGCTTAGCCTTTCTAGCATCACGTCCATCAACACTCAGCTAAACAGCGTAGTGCAACAGATAACCAATGTCTTTACTAGCAGTAACAATAACAACGACAACAACAACAATGATAGTAACAACAATGATGATGGGTTGGACGCTTAG

Protein

Gene

>AfisC3G08258
AAAAAAAGAAAGAAAAAAATGTATGAAGATTGTCAAGTACTGTCAACGATGGCTGGATCATCGAATGACGACAACTCACTCATTCCCCCCGATGCTTTGTTTTCAAACCCTAATTTTGGGTTTATGAGCAATATGGCCTTCAATCCATTTTCGAATATAGTCCCTGTAAGTTCACAAACATTTTAATCTGTGCGTACTTGTAAGCAAAGTTGCATGTATATTTTGGCACTTGCTGATGTTTTCAGGGGTGTTTCGAACACGCAGAAGGAGGAGGAAGGAGGAGGGATGATGATGATGATGAGGTCCAAGATGGAGGAGGAGCTGAGTGGATCCGGCAGCGGAGGACACGTGGATGGCATCAGCTGCGGCGAAGAGAACGAAAAGGATGACATGGTGCTGCGCGGCAACGGACCTGACGGCAAGAGGAAGCGCTACCACCGCCATACTGCTCGTCAGATTCAAGAAATGGAGGCGTAAGTTTTCTCATCTACCGAATAAAGGAACTTACTTTTGCTTTTATGTTTGTAGGTACTTGCATTTTGCAAAAATTGGGTGGTTTAGTACACATGGTTGAATTTGTTTGATGCATTTTAGGGCAAAAGATATTATTTTTGATTAGAGAGAGAACTTAACTTCTTATTTTGATAATTTACAGAAGTAGGAAAACATCATGCATTCTGGATCATCAGATCGTTCAGTTTTCAAAATAGTTCATCTTTTTTTTTTTTTTTTTGTAAATTTTTTTTATTGATTAGAGATTAAGTATAATATATAAATTTTGGTTATTCTTAATCAGTTAATAAGATTGGGGATTTAATTTACCCAAATAGAGATACAAGTGGCATTGTTATGGTTTGATTGCAGATTAGACAGTCTAATCTGAAATCTTACACTTAATTTTGGTTTAATAAATCTAGTTAATGTGGACTGTTTGTTTCATCATTTTCATATTGCATGATCTTTCATTGTTGACTTTTTACTAGAACAGGCAATCAAAATCCTGAACAATAGTTTTATAAAATTGTTTTCTTTGACCATAATTCATTAATATTAACTTAAATAAATGTAGGGTGTTTAAGGAATGCCCTCACCCAGACGACAAGCTGCGATTAAAGCTGAGCCAAGAGTTGGGACTTAAACCACGTCAAGTCAAATTCTGGTTCCAAAACAAACGTACTCAGATGAAGGTATCATTTATGTTAACATACTAAAAAAAGTAGAGAATTTCAAAAGATAAATAATAAAAATAAAAATGAAGAAAAACTATCAGAACAAAAATTGTAGGTTGAAAAATTACATACTAATCACGGATATATATTGTGCTGTAGGCACAACAAGATAGGACTGACAATGCGATACTCAGTGCTGAGAACGAATCCCTTAAAAATGACAATTACAGGCTTCAAGCTGCACTAAGAAACGTGATGTGCCCTAATTGTGGCGGGCCTGGCATTCTTGGAGAAATGTCATATGATGAACAACAGCTCAGACTTGAAAATGCCCGCCTCAAAGATCAGGTATATTTATACACAATAAATACCGCATATCTAATTCATCTGCATAGGAGATTCTGCATGATTTTTTAAAAATATCGTGGTTCACTTATATCTTGGCAAATTCATTTTTCAACAGCTAGAACAAATGTCTTGCTTTATCTCTCGATACACAGGCCAAGTTCAGATGCAATCTTTGGGGTCTACACAGTCTCTGATGATGCCATCACTAGAGCTCGATATGAATACTTATTCAAGGCATTTCAATGACCAACAACAAGCAATGGGAGTTTGTAATGATATAGCTCCAGTTCAAAATAGTGTTTTGATCATGGATCAAGGTAAAGGATTGGCCTTAGATTTGGCTTTTACAGCATCTGAACACTTACTGAAGTTATGTACAATGAATGAGCCTTTGTGGGTTAATAGTAATGGGGGAATTGTTAATGAAGTCTTGGATTATGAAGAGTATAAGACATTGTTTAATTGGCCTGTTGAACTTAAGCAACAAAGTGAAGGAGTTAGGATTGAAGTCACAAGAGATAGCGGGATTGTTATGATGAATAGCATTACTTTGGTTGATGCCTTCTTCAATGCTGTAAGTTACGGATTATATATATTGCTTTTAGTATATGATTATGTATGGTGTCTATTTAAATTTATGTTTTTGATTTGTATTTTCTAGAATAAGTGGTTGGAGTTATTTCCTACTATTGTGAGCAAAGCGAAAACGTTGCAAATTATTGCTGAAGGGATATCTAGTCATGGCAACGGCTCTCTTCATTTGGTAAGTATCAAATCTTTGTTCATACTTAATTTTTGTGGAATGCTGCAATATTGTTAGTGTTATGTTGTGACTTGATTAATAATTTTGACTTGTGAAGATGTTTGCGGAGTTTCAAGTTCTATCACCATTGGTGCCTCCACGCGAGGCTCACTTTCTTAGATATTGTCAACAAAACGTTGATGAAGGAACTTGGTTGATTGTTGATTTTCCTATTGATGGATTTCATGGACTCGAAATGTCCCTGACTCGTTATAGAAGGCGACCATCTGGATGTATCATTCAGGACATGCCTAATGGTTATGCTAAGGTAAGTAGGCTTATCTTTTCTTTTCATTTCATTTCATTATTTACTATTGGGAAATTTTACTTTTTCCTAAGACTCGAAAGACCAAGTTTTGTTTTACATCCTGAGGGATTTATGTTCCCTTAATATACATTTATATCTGATCCATAACATATGTATGCTAAAAATTTTCTATGTTATAGACACATACACATTTCTGTCATATAATATGGTAAAATCAAAGATCTTTGATTAAAAAAATTATCTACAGGTGACGTGGGTTGAACATGGAGATGTACAAGATACCCAAGTCCATCAAATATTTGGCAAACTTGTTAACAGTGGTGTTGCCTTTGGTGCAACGAGATGGCTCTCCCTCTTGCAGAGGCAATGTGAAAGACATGCTAGTCTCATGGCTCAAAATATTCCTGACCTTGGAGGTAATTTCACTGTTTTGCTAACATAATATATCATCTTCTATATCTGATTTGATATTGTCTTTTCATAATTTCAGTTATTCCATCTCCGGAGGGCAGAAAGAACATGATGAACTTGTCACAAAGAATGATAAGAACATTTTGTGCAAACATAAGTTCGTCCAACAACCAATCGTGGACTGCGCTGTCTGAATCATCAGATGATACGATCAGAGTCACAACTCGAAAGAATACAGAACCTGGCCAGCCTAATGGAGTTATTCTTACTGCAGTCTCTACAGTTTGGCTTCCATTTTCACACAGTCAAGTGTTTGAGCTTTTATCTGATGAGCAAAAGCGAACTCAGGTGCATACGATAGTTTTATTTATTAATTTTTTTATTTTTTTTATAGAAAGAAATTGTGTTCTATAAATAATTAAAATGTAACTGATGTTGCAGCTTGATGCACTTTCATATGGAAATTCATTGCATGAGGTGGCTCACATTGCAAATGGTTCCCATCAAAGGAACTGTGTTTCCCTTATGCGCATAAATGTAAGTACATTTCAATACCGCTGTCATTTGCATGTTAATTTCTTTGACATACTAACAGAACTGTGGAAAAAAACCAGATGTTAATATGAAACCAAAATAGTTGATAGAGAGCAAACATTAATGAATGTATGACAATAAGATGGTTGTGCATGTCAGTAGCAAAAACAGTGCAATCAATTGTGATATTAAATGGGGCTTTGGATTCCAGGCTGTTTGCACTTTTTTTACGCCTAATTTTTTTTGTATACTTAGGGAACAGTATGGTATGGACTTTTAATTCTTAGCAGGAACAATAGTACTCTTGCAAACAGTTCAGAAAAAAAAAAAAACTTGCTGTACATAGCATACAGTTGTGTAGTGTAGTCTTAGGTATGTTGAGAATTTACTCCTATGTTTTACCTAGTGAAGCAATGAACATTTATTGAATTGTTTTAGGTTAGGGTGATTGATTGATCTGCGCATGAATTCATTATTTTGTTATCAAAATCAGTTGGATATTCTGCGATGCTTCATCAAAATAATCATCCTCCAACCATGCCCTTTTTAGGGTTAATGTTGACAATACCAGTTTAGATAAGACAAACAATTGAACATGAGCAATTTTATCAAACATTTCCCACGAAAAGTAGAATGAAGAAATTTTGTTTTTTTTCTTTGTCAAGCTGACACTACCATCACTTACTTTTTTTATTGCATTGTCCGTAATCTGATAAAACTACTGAATGTAACACAAGAGATGCAATTGTCACCTTTTAACGTCAAACGAGAGGTGCAAATGTCGGTGCAATTTTCAATTTTCAGTGCCGGATTTCACAAAAGATGCAGTTGTCAATTGTGCAACTGAATTTAATACTGTGGAGTCAACGCATAGTTTCTCTGGATGTTTACATTCGGTGTTTGATTTTTCTGAATATTATAGATAAGAAAACACTCTTTTCAGTCTACAAAATTTGATCTGATCTAAACTTTTTAAAGGTAAGTTTCAATCTAATATAAAAAAGGACTTTTTACACTTCTAAGTGTGCAGTTATTGTTCTGGTCTCTAAATCAATGAGTATTTTGATGCTCCATAAAAATAATACTGCCTCAACCATGTTTTCTAGGGTTAGCATTTACAATAACTCATGATAAGAAAAACAATTGAACATGAGCAATATCTAACTTTTATAAGCATCTTAAACTTATATGGGCATCTTTCATGTACGTACACAAAGTGTAACTATGAATATATTCATGCATGCACACAGGCACCAAGCAACTCATCGCAGAACGTGGAACTACTACTGCAAGAGAGCAGCACCCACGACCTTGGTGGCAGCATCGTGGTCTATGCCACGATCGACGTGGACGCGGTCCAGATCATGATGAGCGGCCAAGATCCATCCTATGTCCCTCTCCTCCCCACCGGATTCGTAGTCCTGCCCGCTCCTTCCTCCCACCCCACCGACGTGGGACACACATCCGGTACTGGGTGCCTTCTCACGGTCGCGATGCAGGTCCTCGCTAGCTCGATCCCGTCCGCCAAGCTTAGCCTTTCTAGCATCACGTCCATCAACACTCAGCTAAACAGCGTAGTGCAACAGATAACCAATGTCTTTACTAGCAGTAACAATAACAACGACAACAACAACAATGATAGTAACAACAATGATGATGGGTTGGACGCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919976.1	3.1e-282	homeobox-leucine zipper protein ROC3
Swissprot	A2ZAI7.2	5.3e-242	Protein RICE OUTERMOST CELL-SPECIFIC 3
trEMBL	A0A6I9R3P1	2.3e-282	homeobox-leucine zipper protein ROC3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G46880.1	50.25	0.0	763	HB-7;HDG5	homeobox-7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08258	AT5G46880.1	790	337	13	30	776	33	809	50.25	0.0	763
AfisC3G08258	AT4G04890.1	684	336	14	102	769	62	731	46.49	0.0	633
AfisC3G08258	AT4G17710.1	754	324	14	28	779	40	709	45.62	7e-178	621

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	103	158	59.7	1.6e-16
PF01852.16	START	Domain	296	521	121.3	3.2e-35

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0042335	P	cuticle development
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0048497	P	maintenance of floral organ identity
GO:0048765	P	root hair cell differentiation
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network