Detail information of AfisC3G08388


Location
GeneChrStartEndStrand
AfisC3G08388chr314912850241491290679+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008794708.11.3e-57myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW0.14.1e-40Protein PHR1-LIKE 7
trEMBLA0A8B8J6M32.8e-57myb family transcription factor PHL7-like isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G01060.160.475e-73 271myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag348688.t1
Allium fistulosumAfisC3G08388
Allium sativumAsa2G06908.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain5010134.21.9e-08
PF14379.3Myb_CC_LHEQLEFamily13217878.32.3e-22

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0000719Pphotoreactive repair
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003904Fdeoxyribodipyrimidine photo-lyase activity
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0007623Pcircadian rhythm
GO:0009536Cplastid
GO:0009555Ppollen development
GO:0009567Pdouble fertilization forming a zygote and endosperm
GO:0009650PUV protection
GO:0010628Ppositive regulation of gene expression
GO:0016036Pcellular response to phosphate starvation
GO:0043565Fsequence-specific DNA binding
GO:0055063Psulfate ion homeostasis
GO:0071486Pcellular response to high light intensity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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