result

Gene information

Detail information of AfisC3G08439

Location

Gene	Chr	Start	End	Strand
AfisC3G08439	chr3	1502731268	1502733983	+

Sequences

CDS

>AfisC3G08439
ATGTCGTGTCTTGATGCATTTGTTTTCGTATATTGTATGTTATGTTTTGTGTGCAGGTATCTCCAGAACAACCATTTCAGTGGTTATGTCCCTAAACATTTCAACTTCATTCCAAACATGAGAATTGATGGTAACCAGTTTGAACCTGGATTTGATATTCCATCTTCATTTGTGAATGGAAGCACAGAATCTCCTAAAACATCAAAAGATGCAAAATCCCGAAGCATCCCTGAATCAAAACTAAAACCTCTGAAAAACTCCAATAATCATAGAAGGCTTTCAAGCGTTGGAGCAACTGTGGGGATCCTCTGTGGTGTTCTATTAGTGGTTCTATTTGTTTCCATTGTCTTGGTACTGCTTTACAGACCACGTATAACAAACCTGAAGAAATCGAAGATACCAAGAGAATCTCTCTTTGATCTTCCGGTTACTGTACCCAAAGTGTCTGCAATCAGTAAGGAAAAAATCAACTCGCTTTCTCCTCCTATTCCTACGATCGTAACTCCACCTACTACGGTAGGAAGAATCTCTAGAAGGAAAAGTTGTTCGTGGAGAAATATAAACCTGGAACATGCAAAGGTCTTTTCTCTTCCGGACCTTCTTAAGGCCACACACAATTATAGCAATGATGGTATTATCGGTGAGGGTCCAAATGGCTATGTTTACATATCTCAGTTTCCTGATGGTCAGATGCTTGCTGTGAAGAAGTTCAAATTGGTTGCAAGTGAAGTAGCCAATGATGAATTTCTAAAATGCATTCATAACATGATGCGACTAAAGCATCCAAATATTAACAACGTCATAGGCTATTCTGTTGATCGAGAAGAACACGTTCTTGTTTACGAATATGCAAAAAATGGGTCGCTTAGTGATGTTCTCTATTCCTCTTCCGATGAATTATGCAAAGCTCTTTCCTGGAAAATCAGGCTTAGGATTGCTCTTGGTGTAGGTTATGCTTTAGAATATATGCACTGTATATGTTCTCCTCGCTTGGCACATGGAAATTTGAAGGCAACCAACGTTTTGCTTGACCACGAATTAGTGCCTCGACTCACTGACTGTGGATTCTACACATTAAGGCATCTGATTAAATCAGATACAAAGGCTCCAGGCTTTGATGTAGAATCTAGCGGACATGCTGCACCTGAACTTGATACTCCAGGAGCTGACATGACTAAATGTGATGTGTATAGCTTTGGAATTTTATTACTGGAGCTTTTAACTGGAAGAAAACCATTTGACAGATCAAGGAACAAAGAGGAGCAATTATTAGTAAGATGGGCATACCTCCACCTCCACGACATAGAATCTTTAGAAGCGATGGTTGATCCAGAAATCAAAGGAACCGTATCTTCAAAAGCCCTCTCTCAATACGCCGATATCATCTTATCATGCATTCAGGTGGAGGCAGGATTCAGACCAATAATAAGTGCCGTAACTGGAAATTTGCTAGATGTAGTACAGAAGCTGTCTAGGCCTCATCAACATAGCAGTAGGAAGCAAAGAAGATCATCAGTCGATGACTTTGTTTCTGATCTGAATGCAACGTCTGAGATTTCATTCAAGTCAACCCTAGCCTACTTTGACGCCCCAACTGCTCCTGTATATGATTAA

Protein

Gene

>AfisC3G08439
CATATTTGCTATCATGTCGTGTCTTGATGCATTTGTTTTCGTATATTGTATGTTATGTTTTGTGTGCAGGTATCTCCAGAACAACCATTTCAGTGGTTATGTCCCTAAACATTTCAACTTCATTCCAAACATGAGGTAATGTTTCAGAATCTTAACACACTTTTTTTATATTTTTAAATGATGGAATTAACCGACTCTCTTTTGATAGTTGACATTAATAATTCTTGTTTCCATATCAGAATTGATGGTAACCAGTTTGAACCTGGATTTGATATTCCATCTTCATTTGTGAATGGAAGCACAGAATCTCCTAAAACATCAAAAGATGCAAAATCCCGAAGCATCCCTGAATCAAAACTAAAACCTCTGAAAAACTCCAATAATCATAGAAGGCTTTCAAGCGTTGGAGCAACTGTGGGGATCCTCTGTGGTGTTCTATTAGTGGTTCTATTTGTTTCCATTGTCTTGGTACTGCTTTACAGACCACGTATAACAAACCTGAAGAAATCGAAGATACCAAGAGAATCTCTCTTTGATCTTCCGGTTACTGTACCCAAAGGTTAGGTGAAATCTCTAGTCGTACATTATTTCGCTTTTCCTTTCACTATTGTTATCTCATACTTGGCATGTCAGGTATACCATACTGGTAGTTGATGGAAATATCAAATTAGTATAAAACTGCATTGTCAGGTATACTATACTGGCAATTGATGCTAAATGCTAGGACCATGAACAACTTGTTTTGCAGTGTCTGCAATCAGTAAGGAAAAAATCAACTCGCTTTCTCCTCCTATTCCTACGATCGTAACTCCACCTACTACGGTAGGAAGAATCTCTAGAAGGAAAAGTTGTTCGTGGAGAAATATAAACCTGGAACATGCAAAGGTCTTTTCTCTTCCGGACCTTCTTAAGGCCACACACAATTATAGCAATGATGGTATTATCGGTGAGGGTCCAAATGGCTATGTTTACATATCTCAGTTTCCTGATGGTCAGGTAAACATAAATATTAGTATATTATTACAGAAGAGTTGCACTACAAGGAACCAATACATGAGGCTCATATACTATTTTTTGTGAATTATGAAGATGCTTGCTGTGAAGAAGTTCAAATTGGTTGCAAGTGAAGTAGCCAATGATGAATTTCTAAAATGCATTCATAACATGATGCGACTAAAGCATCCAAATATTAACAACGTCATAGGCTATTCTGTTGATCGAGAAGAACACGTTCTTGTTTACGAATATGCAAAAAATGGGTCGCTTAGTGATGTTCTCTATTCCTCTTCCGATGAATTATGCAAAGCTCTTTCCTGGAAAATCAGGCTTAGGATTGCTCTTGGTGTAGGTTATGCTTTAGAGTATGTTTTCTTTCCCCCCATTATTATGTTTTATAATACATAAGTAGATATTGTCGTTTCTTGAAAAGATGAGCAAATGCTATGCTTGGCCTTTTTTTTAGATATATGCACTGTATATGTTCTCCTCGCTTGGCACATGGAAATTTGAAGGCAACCAACGTTTTGCTTGACCACGAATTAGTGCCTCGACTCACTGACTGTGGATTCTACACATTAAGGCATCTGATTAAATCAGATACAAAGGTACATGCTATCACTTAGGATAACGGGTATGGTGTATACACGTACAGCTCAATCAAAGGAATGTTCTTATTGTGCTGCAACTTTAATTCAGGCTCCAGGCTTTGATGTAGAATCTAGCGGACATGCTGCACCTGAACTTGATACTCCAGGAGCTGACATGACTAAATGTGATGTGTATAGCTTTGGAATTTTATTACTGGAGCTTTTAACTGGAAGAAAACCATTTGACAGGTCTGTACTTTACATGCTTATATGTACTTTTTCTTCATTAATTTACATGGAATAATGTTTATCATCAATAGAGAGGTAATTTCTTACTAGATTCCAACATGGGGGACTAAAACAGAGAGTCTAAAAGAAGAGTTAATTATAAAACCAGGTTGGTTTGAAAACTTACTTCAAGAATAGACTTGGTTACGGACTTATTTACAAAAATATGCTTCTTTTGGGGTTTAGTATTTGCACATTATAAAAGTGTGCAAATACATTTTCAAATTTGTATTTGCACAGTTTAAAATTTGCTGATACGGAAACTGATCTTTTTTTTGTAGTAAGCTTAAGGGCAAGCTTACTCTTGCAGTGAGAGAGTCTGTAAAAGAATTACCTCTTCTCTGTGCTATATATTATTCCTCATTTTGCGCATTTTTTGACGAATATATTAGATCAAGGAACAAAGAGGAGCAATTATTAGTAAGATGGGCATACCTCCACCTCCACGACATAGAATCTTTAGAAGCGATGGTTGATCCAGAAATCAAAGGAACCGTATCTTCAAAAGCCCTCTCTCAATACGCCGATATCATCTTATCATGCATTCAGGTACATAATTTAAAACCAATCAACTTTGTAAAAGATTAAAAATAAGAAATTTTAATCAAATTTTGACTAATGACTAACAGGTGGAGGCAGGATTCAGACCAATAATAAGTGCCGTAACTGGAAATTTGCTAGATGTAGTACAGAAGCTGTCTAGGCCTCATCAACATAGCAGTAGGAAGCAAAGAAGATCATCAGTCGATGACTTTGTTTCTGATCTGAATGCAACGTCTGAGATTTCATTCAAGTCAACCCTAGCCTACTTTGACGCCCCAACTGCTCCTGTATATGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265270.1	3.0e-119	protein STRUBBELIG-RECEPTOR FAMILY 2-like isoform X3
Swissprot	Q9FG24.1	5.4e-81	Leucine-rich repeat receptor kinase-like protein SRF2
trEMBL	A0A8B7MTI1	2.6e-117	protein STRUBBELIG-RECEPTOR FAMILY 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G22130.1	38.49	1e-81	301	SRF8	STRUBBELIG-receptor family 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08439	AT4G22130.1	491	274	11	21	507	220	686	38.49	1e-81	301
AfisC3G08439	AT4G22130.2	491	274	11	21	507	79	545	38.49	2e-81	300
AfisC3G08439	AT5G06820.1	509	279	12	21	508	217	708	37.72	6e-78	288

Ortholog group

Species	Genes
Allium cepa	g156776.t1
Allium fistulosum	AfisC3G08439
Allium sativum	Asa2G06950.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	207	475	99.9	1.3e-28

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000902	P	cell morphogenesis
GO:0042742	P	defense response to bacterium
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004871	F	signal transducer activity
GO:0005634	C	nucleus
GO:0006468	P	protein phosphorylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0007623	P	circadian rhythm
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010059	P	positive regulation of atrichoblast fate specification
GO:0010063	P	positive regulation of trichoblast fate specification
GO:0010071	P	root meristem specification
GO:0010183	P	pollen tube guidance
GO:0010305	P	leaf vascular tissue pattern formation
GO:0042127	P	regulation of cell proliferation
GO:0045087	P	innate immune response
GO:0048366	P	leaf development
GO:0048481	P	plant ovule development
GO:0048584	P	positive regulation of response to stimulus
GO:0090404	C	pollen tube tip

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network