result

Gene information

Detail information of AfisC3G08473

Location

Gene	Chr	Start	End	Strand
AfisC3G08473	chr3	1509992859	1509994024	+

Sequences

CDS

Protein

Gene

>AfisC3G08473
CAAATTAACTTTAAATAAAATCGATAGAATCAAAAACAAATGGATCGAATCAAAGGACCTTGGAGCCCTGAAGAAGACGAAGCTCTAAATCAACTTGTTCAGAAGCACGGACCTCGCAACTGGACTTTGATATCTAAATCGATTTCGGGGAGATCAGGCAAATCGTGCCGTCTCCGATGGTGCAATCAGCTATCGCCTCAGGTGGAGCACCGTCCGTTTACTGTGGAGGAAGACGAGATCATCGTCGATGCACACAAACGATTTGGCAACAAGTGGGCAACCATCGCTAGGCTCCTTTCGGGAAGGACGGACAACGCCATTAAAAATCACTGGAACTCCACCTTGAAGCGTAAGTGCGAGGTTTTGAATCTTGACGAGTTCGGCGGTGATGAGTCGAACAAAAGGAGATCGGTGAGTCCGGGATCGACGTCGGGGTCCGATCTGTCGGAATCGAGCGGTAGGATATTCCGGCCGGTGGCGAGGATGGGATCGGTTGAGATGCCGATGGAGGAGCCAGCGACTGATCTGAGCTTGTCACTGCCTGGTTTTGGGGCCGAAGGGACGGAGATTCAGACTGTGGTTGCTGCTCCGGCGTTGCCGAAGGTAGCCGCACCACCGGTGGTGGTTAACGAAGAGTTGATGAGGGTGATGCAGGAGATGATAAGGAAGGAGGTGGAGATGTATATGAGTGGATTTTTGAGTGTTGGTAACGTAAATGGGGATGTGAGGAATGCACGTTTTAAGAATTTGGGAACGGCGAAGATCGAGTAAGGGAAGATTTAAATGTCAAGATGAGAACTTTAATTTCAGATGTTTATTTTTTAAGTAGTTATTTAAGAAGTTCTTTTTGATGTGTACATATAAAAAAAAAATGTAAAATATCTCAAAACTGAGAAGTTGGTCGTTTATTGATTAAATATGCCGAATCAATTCGTTTGCTGGGTATAATACGGTTGTTTAATGAGTTCTAACCGTGGATAAGTGCTCTCTATCTGCGTCATTATGTTGACTCAAATGCATTAAAGAACCGATTTTAACCACCCTGCAACTAACTGAAAGTATACTCGTAACAAACGGAGGCAGGCATATATGAAGGATATTTTTTATTTAATTGATTGTATTTATTCATGTGGTTGGATAATTTTGGTCAAAATAAGCAATAAATT

Functional annotation

Database	accession number	e-value	annotation
nr	RYQ80741.1	5.4e-68	hypothetical protein Ahy_Scaffold1g106946 isoform A
Swissprot	O23160.1	4.9e-58	Myb-related protein 73
trEMBL	A0A444WTM1	3.9e-68	Transcription factor MYB44-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37260.1	50.36	2e-60	228	ATMYB73;MYB73	myb domain protein 73

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08473	AT5G67300.1	272	80	7	2	217	3	274	50.00	2e-60	228
AfisC3G08473	AT4G37260.1	274	86	8	1	225	9	281	50.36	2e-60	228
AfisC3G08473	AT2G23290.1	262	86	6	1	217	9	270	50.00	1e-58	222

Ortholog group

Species	Genes
Allium cepa	g53475.t1
Allium fistulosum	AfisC3G08473
Allium sativum	Asa0G01791.1
Arabidopsis thaliana	AT4G37260.1; AT5G67300.1
Oryza sativa	LOC_Os02g09480.1; LOC_Os06g43090.1; LOC_Os09g01960.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	5	50	64.9	4.8e-18
PF00249.28	Myb_DNA-binding	Domain	59	101	53.3	2.1e-14

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010200	P	response to chitin
GO:0016363	C	nuclear matrix
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048527	P	lateral root development
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0090307	P	mitotic spindle assembly
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network