result

Gene information

Detail information of AfisC3G08480

Location

Gene	Chr	Start	End	Strand
AfisC3G08480	chr3	1511003097	1511006049	-

Sequences

CDS

>AfisC3G08480
ATGATGTCTTTCCTCTCCCTTCTCCTTCTCATCCTCTTTCCTCCATTAACCTCGTCACTAAACCAAGACGGAGTTCTCCTCCTCTCATTCAAATACTCAACACTAAACGACCCAATCTCAACTCTCTCCTCCTGGAACTATGAAGACGCCACTCCCTGCTCATGGAACGGCGTCATCTGCGCCGGCTTCCCTAACCCCGACGACCCATTCAACCAAACAACCCAATCTCGAGTCATCAGTCTAATCCTACCAAATTCGCAGCTCCTCGGTTCGATTCCCGACGACATTTTCCTAATCGAACACCTACGTCACCTCGATTTATCGAACAATCTCCTAAACGGATCCCTACCCATGTCTCTATTCAACTCAACCGAGCTAAAGATTCTGTCTTTATCCAATAACGAGATTTCAGGTGAGCTGCCTGAGCTCATCGGATCAGTAACCAACTTGCAAGTTTTGAACTTGTCTGATAATGCTTTGAAAGGGTCCGTCCCAAGCAATCTTACTCTTCTTCCTAATTTAACCACTGTCAGCTTAAGCAGTAATTACATCTCTGGCCTTTTACCAAGTGGCAGTTTTGATAAACTGAGAGTTTTGGACTTGAGCTCTAATCTCATCAATGGATCGATTCCTGTCGATTTCAGCGCTGAAAACATTCAGTATCTGAACTTGTCATACAACAAGCTTTCAGGCTCGATTTCCACTGAGTTTGGAGCAAAACTGCCAACAAATTCTGTTATAGATTTATCATTCAACAACTTCAGTGGTGCGATTCCTGAATCATCGGCTTTTTTAGCTCAAAAGTCGAGTTCTTTTCAAGGTAATCCTGGCCTTTGTGGAAAGCCTTTACAGAATCTATGTACAATACCTTCTACTTTGTCTGATCCACCTCCAAATGTTACCACCTCTAATAATAATCCTTTCGATTCGCCTCCTGCTTTTGCTGCTATTCCTAAGAGTACTTCTAGTGTTAATAGTTCAGATAGTTCGAATTCGAGTTCAAGTAGTGGCATTAAACCAGCTACCATAGCCGCTATAGTTGTAGGAGACTTGGGAGGTATTGCTTTGTTGTTTGCTGTGTTTTTGTATGTATATAATGTTAAAAAGAATAAAAAGAGTAGAAAGAAGCAAGAACATATGAAAGAGGTCGTTCAACAGAGGACATTGCATTCAAATTCAAAATCAACTCAATTTACGTCTTTGATTTGTTGTTTGAGAGAGAACAAAAATGAAGAAGAGAGTACTACCGAAAGTGGCAGTAGCTCTTCTGATGAAGAAAAAAGTCAACAGGCAGCCATACTAGTAGTAGTAGATGGAGAAGTTAAGCTTGAAATGGAGACATTGCTTAAGGCATCTGCTTACATATTAGGTGCAACCGGTTCAACTATAGTTTATAAAGCAGTTCTTGCAGATGGAACTGCGTTGGCTGTAAGAAGAATTGGAGAGAATAATGTGGTTGACAAGCTTAAAGATTTCGAAGCTCAGATTCGATGGATTTCGAAGATAAGGCATCCAAATTTGCTTAGAATTTGGGGTTTTTATTGGGGGCCAGATGAGAAGTTGCTGATTCATGACTATGCTCCTAATGGCAGTCTTGCCAATATCTCTTTCAGTAAAAAGCTAGGGTCATCTCCATTCCATTTAAGCTGGGAATCACGACTAAAAATAGCACGAGGCATAGCAAAAGGCCTCACATACATCCACGAAAAGAACCTAATCCACGGCAATATAAAACCAAGCAACATTCTATTAGATTCAAACATGGAAGCAAAAATAGGAGACTTCGGCCTAGACCGTCTCCTATTGATGGATTCAGCCACAAAGCATGGAAAATCAGCACGATTATTTGGAAGTAAAAGATCGATGCATTCACAAGCAAGCCTACCCGAACTCTCCCCAATGCAAGGAGCTAGTCCGATAGGTTCGACCAGTTCGAACACGGTCCCATATCACGCACCCGAGTTTCTGAAAAACCTAAAACCAAATGCAAAATGGGATGTGTACTCATTTGGTATGGTGTTGTTAGAATTGATAGCAGGTAGGGTTTATAGCGAAGAAGAGATAAGTCAATGGGGTGGTGGGTTCGTGGTAGAGGAGAAGAGTAGGGTTTTAAGGATGGTGGATTCGAGCTTGAGGAGCGAAATTGAAGGGAAGGAGGAAGCTGTTTCGAGCTGTTTCAAGTTAGGGTTTGCATGCGCGAGCAGTGTGCCTCATAAGAGGCCTAGCATGAAGGATGTAGTCATGTTGTTAGATAGAATACCTCCTCCTTCTTCCTCCTCCTCTTCTTGA

Protein

Gene

>AfisC3G08480
ATGATGTCTTTCCTCTCCCTTCTCCTTCTCATCCTCTTTCCTCCATTAACCTCGTCACTAAACCAAGACGGAGTTCTCCTCCTCTCATTCAAATACTCAACACTAAACGACCCAATCTCAACTCTCTCCTCCTGGAACTATGAAGACGCCACTCCCTGCTCATGGAACGGCGTCATCTGCGCCGGCTTCCCTAACCCCGACGACCCATTCAACCAAACAACCCAATCTCGAGTCATCAGTCTAATCCTACCAAATTCGCAGCTCCTCGGTTCGATTCCCGACGACATTTTCCTAATCGAACACCTACGTCACCTCGATTTATCGAACAATCTCCTAAACGGATCCCTACCCATGTCTCTATTCAACTCAACCGAGCTAAAGATTCTGTCTTTATCCAATAACGAGATTTCAGGTGAGCTGCCTGAGCTCATCGGATCAGTAACCAACTTGCAAGTTTTGAACTTGTCTGATAATGCTTTGAAAGGGTCCGTCCCAAGCAATCTTACTCTTCTTCCTAATTTAACCACTGTCAGCTTAAGCAGTAATTACATCTCTGGCCTTTTACCAAGTGGCAGTTTTGATAAACTGAGAGTTTTGGACTTGAGCTCTAATCTCATCAATGGATCGATTCCTGTCGATTTCAGCGCTGAAAACATTCAGTATCTGAACTTGTCATACAACAAGCTTTCAGGCTCGATTTCCACTGAGTTTGGAGCAAAACTGCCAACAAATTCTGTTATAGATTTATCATTCAACAACTTCAGTGGTGCGATTCCTGAATCATCGGCTTTTTTAGCTCAAAAGTCGAGTTCTTTTCAAGGTAATCCTGGCCTTTGTGGAAAGCCTTTACAGAATCTATGTACAATACCTTCTACTTTGTCTGATCCACCTCCAAATGTTACCACCTCTAATAATAATCCTTTCGATTCGCCTCCTGCTTTTGCTGCTATTCCTAAGAGTACTTCTAGTGTTAATAGTTCAGATAGTTCGAATTCGAGTTCAAGTAGTGGCATTAAACCAGCTACCATAGCCGCTATAGTTGTAGGAGACTTGGGAGGTATTGCTTTGTTGTTTGCTGTGTTTTTGTATGTATATAATGTTAAAAAGAATAAAAAGAGTAGAAAGAAGCAAGAACATATGAAAGAGGTCGTTCAACAGAGGACATTGCATTCAAATTCAAAATCAACTCAATTTACGTCTTTGATTTGTTGTTTGAGAGAGAACAAAAATGAAGAAGAGAGTACTACCGAAAGTGGCAGTAGCTCTTCTGATGAAGAAAAAAGTCAACAGGCAGCCATACTAGTAGTAGTAGATGGAGAAGTTAAGCTTGAAATGGAGACATTGCTTAAGGCATCTGCTTACATATTAGGTGCAACCGGTTCAACTATAGTTTATAAAGCAGTTCTTGCAGATGGAACTGCGTTGGCTGTAAGAAGAATTGGAGAGAATAATGTGGTTGACAAGCTTAAAGATTTCGAAGCTCAGATTCGATGGATTTCGAAGATAAGGCATCCAAATTTGCTTAGAATTTGGGGTTTTTATTGGGGGCCAGATGAGAAGTTGCTGATTCATGACTATGCTCCTAATGGCAGTCTTGCCAATATCTCTTTCAGTAGTAAGCATTTTCCTTTTAAGCTTATAATCGTATATGCTAGTCTAGGATAATTTAATCGAAAATCTTTCGCTGCACAAGTAACTGCCGTTCTAGGATTATGATGGTCGCTGGCACTTTTTAGTAGCAATTATTGTTTTTCTTTTTAGTCCATTGAATTAATTATGATATTTTTAACAGCTAGCATACTCATTCCTTGCTTAACTAGAGGATAAGGTTTATGTGTAACAAATTTAATATAGTACAAAAATTCTTGGGTTGATTGAAAGCAAATCACATCCTCAATTTATTTTTTCCCTGTACCATTCATTGATTATAAATTTAACCAATTGATATTTAATACCACAAAGTAGAAACGGATTGTTCAATCCCATGAATCAATCTGGTGGTTTTTAGAATAGTCTTTTCCCCGTTAATATTTGTTTCAAAGAAGCAAAAAAGTTGTGGCTACTTTTGTTATTATTATTTATCCTTTTGCACTAAAAAGATGTTCAAAGAGAAACAAAATTGCTTTTAAACTTGTTTTCTCCCTGAATAAAGGATCAACTTTAATCAGAAAAATGCTTCTAAACTTGCATAAATACAGAAATATATTTGTTTGATTTCAACCCTAAAGTAATATTATAGCTATACGGAATTGACAACAGTCATCATTTTTACATTGCAGAAAAGCTAGGGTCATCTCCATTCCATTTAAGCTGGGAATCACGACTAAAAATAGCACGAGGCATAGCAAAAGGCCTCACATACATCCACGAAAAGAACCTAATCCACGGCAATATAAAACCAAGCAACATTCTATTAGATTCAAACATGGAAGCAAAAATAGGAGACTTCGGCCTAGACCGTCTCCTATTGATGGATTCAGCCACAAAGCATGGAAAATCAGCACGATTATTTGGAAGTAAAAGATCGATGCATTCACAAGCAAGCCTACCCGAACTCTCCCCAATGCAAGGAGCTAGTCCGATAGGTTCGACCAGTTCGAACACGGTCCCATATCACGCACCCGAGTTTCTGAAAAACCTAAAACCAAATGCAAAATGGGATGTGTACTCATTTGGTATGGTGTTGTTAGAATTGATAGCAGGTAGGGTTTATAGCGAAGAAGAGATAAGTCAATGGGGTGGTGGGTTCGTGGTAGAGGAGAAGAGTAGGGTTTTAAGGATGGTGGATTCGAGCTTGAGGAGCGAAATTGAAGGGAAGGAGGAAGCTGTTTCGAGCTGTTTCAAGTTAGGGTTTGCATGCGCGAGCAGTGTGCCTCATAAGAGGCCTAGCATGAAGGATGTAGTCATGTTGTTAGATAGAATACCTCCTCCTTCTTCCTCCTCCTCTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008802352.1	5.3e-154	probable LRR receptor-like serine/threonine-protein kinase At4g37250
Swissprot	C0LGS3.1	2.7e-102	Probable LRR receptor-like serine/threonine-protein kinase At4g37250
trEMBL	A0A8B7CMK4	3.8e-154	probable LRR receptor-like serine/threonine-protein kinase At4g37250

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37250.1	48.27	0.0	675		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC3G08480	AT4G37250.1	779	357	15	2	758	3	757	48.27	675
AfisC3G08480	AT4G34220.1	788	340	14	5	753	12	753	46.07	645
AfisC3G08480	AT2G23300.1	761	344	11	19	761	30	765	49.15	639

Ortholog group

Species	Genes
Allium cepa	g404029.t1
Allium fistulosum	AfisC3G08480
Allium sativum
Arabidopsis thaliana	AT2G23300.1; AT4G37250.1; AT5G67280.1
Oryza sativa	LOC_Os06g43170.1; LOC_Os09g02250.1; LOC_Os09g02250.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	21	60	41.7	9.1e-11
PF13855.3	LRR_8	Repeat	172	229	30.4	2.2e-07
PF00069.22	Pkinase	Domain	456	747	110.4	8.4e-32

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0005515	F	protein binding
GO:0000272	P	polysaccharide catabolic process
GO:0004674	F	protein serine/threonine kinase activity
GO:0007154	P	cell communication
GO:0009505	C	plant-type cell wall
GO:0009570	C	chloroplast stroma
GO:0010069	P	zygote asymmetric cytokinesis in embryo sac
GO:0022626	C	cytosolic ribosome
GO:0030154	P	cell differentiation
GO:0046777	P	protein autophosphorylation
GO:0048509	P	regulation of meristem development
GO:0048653	P	anther development
GO:0050896	P	response to stimulus
GO:0090406	C	pollen tube

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network