result

Gene information

Detail information of AfisC3G08496

Location

Gene	Chr	Start	End	Strand
AfisC3G08496	chr3	1512741258	1512743046	+

Sequences

CDS

Protein

Gene

>AfisC3G08496
ATGGCAATGTTGGCGAGCAGGCAGGGGCATAATGGGAACAATCAGCAGCAGATAGACGCAGGAAAGTACGTTAGGTACACACCTGAGCAAGTAGAAGCTCTCGAAATGGTGTACAGTGAATGCCCAACACCTAGCTCAATTCGAAGACAGCAACTCATTCGAGAGTTTCCTATCCTGTCTAATATCAAGCCAAAACAAATCAAAGTTTGGTTCTGGAATCAAAGGTATTATAAAGCTCAAACATTTATCATATTTAAAATTTGCTTTTGGTTATAATTGTACCTGTTTGAATTGATCGTATATGAATTCTAGTTTGCCTTCTAATCCTATTATTGTTTCGGAAGTATTCTATGAAAAACAGTATATTTTAGCTCATCGTACGACTTATTCCAGTCAACTAAACTATTGTACAATAGCTCCCTTTTCTATTAGTTTGTGTTTTCAAAAATATTCATGTAAAAAGAAGGGTACGAATTCCAGTTATTGAAGCAAATAAATCCTTCGTGCAAAAAAACATTATTTTCATACTATAGTGTGGAACTTGAATCTTGAGTGAAATTGTATATAACGCTTTACAATTTACACATAAATTTCGCGAGAAACAAAGAAAGGAGGCATCTGATCTTCAAAATGTGAACAGAAAGTTAGATGCAACGAACAAGCTATTGATGAAGGAAAATGACCGCCTTCAGAAACAAGTGTCTCATCTTGTTTATGAAAATGGCTACATGCGCCAACGAGTGCACACTATAAGAATAATATATTCTTTACCATTTTCTTCAAAACATGAAATCTTAGTATTGTTATATAAAAATATATATTATTCAATTCAATGTCTAAGGCAAACAAGTTACTTGGTTCATATACTAATACGAACATTCTGTTGTCATATCACTTGATTACAAGTGAACTAAATAAAGAGTAAGCAAAGTTTGTTATTGCTTTGTAACAGTACCGTTCTGTAACTTTATTCCAACTACATACAGGTTAATGTAGACAATTTCTAACGCCCTACATTGAAAAATATATATGCAGACTGCTGCTGCTACTACAGATATTATATCTTTAGGTTTACCTAATCCGTATCTACTCTAACAATTATACAGACTATGATAAACTTCATGAGCATTATGAGCAAGTTTCCAAACTAGGAACGATTTGCTCCTCTTAAATGTACGTGTTTGTTGCATTGTATAGTTCAACACAGTGCTTTCATATAATATTTGGGCAATGTGTGTTATGCTGTATACCTCAACACAACTATGATATTAGAGATGACTGAAACTTTATATTTTCCTATGTTTTAGATCCTGTCTAATTATTTCCTTATATCTTGAGAGAAGATATATTAGGAGTAGACCGAAGTATAAGAACCTAGAAGCAAGGTATTAAAACCCAAGCGAGGATATCAATAACCATTGCTGCATATATACCCATAGCTATAAACATAGATGAAATTTCCTTATTTTTCTTATGTTTGTGTGTATGTGCTAGGAGCATAATATTTAAGTAGAATTGTATTAAGAAAGGCATCACTCACATTATATTTGAGTTTAGAGATTAATGAATGTTAATCCTCGAAATCGTTAGACAGTTAGCTTTTGTTGCATATATTATAATCTAACGGTATTTTCCCTTAGAGTGTCTTTTTCTTAGTTTTTCATTTAGGTTTGAAACAAGAAAAAGAATAACTGGTTATTCTATTATTCTGTCTTATATCAAGCAAACCATGATATTTCTACATTATTTTTTATGTCCTAATTGCTTATTTGATTATTGCAGATGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273236.1	6.1e-26	homeobox-leucine zipper protein HOX32-like
Swissprot	A2ZMN9.2	5.5e-24	Homeodomain transcription factor HOX33
trEMBL	I0IUI5	4.4e-26	Class III homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G34710.1	83.05	8e-26	111	ATHB-14;ATHB14;PHB;PHB-1D	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08496	AT2G34710.1	59	10	18	76	21	79	83.05	8e-26	111
AfisC3G08496	AT4G32880.1	68	18	9	76	2	69	73.53	1e-25	110
AfisC3G08496	AT1G30490.1	58	11	19	76	18	75	81.03	1e-24	108

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	23	75	44.9	6.7e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008289	F	lipid binding
GO:0009880	P	embryonic pattern specification
GO:0008284	P	positive regulation of cell proliferation
GO:0009733	P	response to auxin
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009965	P	leaf morphogenesis
GO:0010067	P	procambium histogenesis
GO:0010072	P	primary shoot apical meristem specification
GO:0010075	P	regulation of meristem growth
GO:0010089	P	xylem development
GO:0043565	F	sequence-specific DNA binding
GO:0045597	P	positive regulation of cell differentiation
GO:0048263	P	determination of dorsal identity
GO:0048364	P	root development
GO:0080060	P	integument development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network