result

Gene information

Detail information of AfisC3G08580

Location

Gene	Chr	Start	End	Strand
AfisC3G08580	chr3	1526242453	1526245308	+

Sequences

CDS

Protein

Gene

>AfisC3G08580
CTAAAATTTCCACACTTCCATTTCGAGTTACTGCTTATTCTTACTTTCCAATTGGTGCATTATATCCCTTCTCAGTTATAATCAATAATTCCCCAAAACTCCTTCAACTCTTCTCTTCTAAATCAACTTGTATTAACCGTTCTAAAATGATGAACAATAGATCATCATCACCATCTCCATCGTATAACGACGTTCGAAATCCTTACAATAGTTACTCTTCCAGCATCATACCTCCATCTTTCACTTCCATTGAAGAAGAGCAGCATCATCAGCCATGGAACAGCACCACCACCGCTACTCAAAATCACCCCATAATCACCGACACTGGCTTCGGGGTGGCAAACGCCGACCATCCACTGCCGTTAGCAATTCCGATGAACTCTGTAGGCAGCAGCAGCAGCTGCTTCCCAGCTAACTACTTCTCTGCAAACTTACAAGCAAATCAGTACCCTAGCTTCATCAAAAGAGAAGAAGGTATGTATGAATATAAGTATTTCAATTATCTGTAAAGTAATAATCTTTTTTTTTCTAAATAAAAAAGAAATATATAAATTAAGGAGGAGGGAGTAGGATAGGACTGAACCTGGGGCACAGAACGTACTTCTCGTCAGGAGACGCTATGACGATCGACCGGCTTCTGACGGCGAGGGCCCACCAAGGCCAGCTTCAGGCGCCGAGGTGCCAAGCTGAAGGCTGCAAAGCTGACTTATCCGGAGCAAAACACTACCACAAACGACATAAAGTCTGCGAGTTTCACTCTAAAGCCACTGCTGTTATTACCAGTGGTTTGCAGCAGCGTTTTTGCCAACAATGCAGCAGGTCTCTTTAATTTTTCTCCTCGCACTCTTTCTTGATTTCTTCATTTTATGAGCTTTTAATCTTCAGATTGCTTCATTTTTTTATGGTTATGATATTGTGTTCAAATACTGAATTAGAGAAGTTTTATAGATACAATCTTTGGAGCTTATCATATTCGATATTAGCAGTTAAATTGGTTTTTTTACACGAACAAATTGATTTTCCGTGCTTATTACATGTAAGTAAGATAGATCCAGTTCTTTATTTAGGTTTATCTTCAAGATAAAAGTTCTATGATTAGAACAGTGGACAATTTTCAGCTTTGTTGATACAATTAATCTTCAGATTATTTTTATATTAGCAAATTATAGATATATAATAAATGTGCAACTTTGTCATCATAATCCATACTGGCAACTAAATTAATTTTTTTACACAAACAAATTGATTTTTCTTGCTTATTACATGTAATTAAGACTGATCCAGTGCTTTATTTTTAATTAATCCTCAAGAAAAAAGTTTCATAATTAGAACAGCACACAACTTTCAGCTTTATTTATACAATTTAGTTACGAAATTTGTGCACATGATTTTTAGCATAAGACAATGAGTTTGGAATAAAATTTTGCTTATTATGTCTTAGGTTTACTTTGGAGATTTAGTACATTGTAGTATCTGAGTAAGGTTACAAATGCAAATATTTGGAAATAGGATTCTATTCAGGATTTCCACCAAATTTAGGGTTTAGAGTTTCATTAATTTGTCCCTAACACTAATTCCTACAAATCCCACTTTTTCGTGCTTTTACATTGTGTTTGAACTTATATGAGGTATCGAATGCAAAAAGGATTAAAATTCCTTTTATCAAAACATGCAGTAGATGGAAATTATATATAGATGGGTACTTTAGCTACTTGTCTATATATGTTGCCTAGTAGATTAGTACAAATTCCTTTCTCTTTTGTCACAAAAACTTTGCACTGTTATTGCATAAAGAATACCTGTTTTGTAATAGAAATAAAGATGATGTATTCCTGAAATAGGAGTTTCTCACTTTTCACTTCACACTTCTTAATTTGACAAGAGTGAATATGATTGAATATTCCTATATATCTTTATTTAGCTAAAGAGAGTGGTAGAATAGATTGGCATAAGCATATAAGTAGAAATGAGAAAAATACAAATGTACAGTATGTAGCTTTTGTTGGAGTATTTTTATGCATATATACGTACGACATATGTGTACAGGTTTCATGTGCTAAGTGAGTTCGATGAGTCAAAAAGGAGCTGTAGAAAGAGGCTTGCTGATCACAACCGTAGGAGGAGGAAACCTCAGAATCTCTCTGACAAGACTAAACATTATTCTTCATCATGTATCAATCCTCTCTCCCTACGCTCTACTCTCCTAATTAATATATATAATTCTTTTGATACAGAGACATTTCTCTCAGTTATTCTCGTACCTTATGTAGCAAGGGCATATATATTGGATCGTTTTACCCATTTTAGCACCCATTTAAAAAAAAAATTACTATGCATTTACAGTACTTCTAAAACTATTTAAGAACATAGACCACTTTCTGTCATCAGGACAAAAATAATAATTTGCTTTGATGCTATTTGGAAAGGTGCCAGTAAATTTAACAAAAAATATATGTTGCTTTAGTCCTATTTAAAAAAGCAATAATGCATTTGTTAAAAGAAAAAATAACGTACTAAGATTTTTTTGTTTTTGTTTTGTTTTAACATTGTTTTGAATAATTAAGTATAAATAATTAGTTCTTGACAACATAAAGGAAGTTAACATTATTTGCATGAGAGCAACACCAATAGCTCATTTCGCTAAAACATTGAACCACATAATAGATCACTGAGTCAGTTTACTAGTATTTGAGAAAAATGTTAACTTCTCAAAATTGTAGTTTATGATACAAGCTTTTTTTTTTCCTATTGACATTATTTGTTTTATCTATAATATGACTAAGCTTGTAATAACATTTAAAAGTACACAAAAATGTTAGGAAAAACCTTATAAGAAGTATATAGAATTGAATTGAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017702534.1	1.4e-49	squamosa promoter-binding-like protein 10 isoform X2
Swissprot	A2YFT9.1	4.4e-40	Squamosa promoter-binding-like protein 10
trEMBL	A0A8B7MXS0	1.0e-49	squamosa promoter-binding-like protein 10 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02065.1	70.09	2e-42	169	SPL8	squamosa promoter binding protein-like 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08580	AT1G02065.1	117	28	2	114	224	146	261	70.09	2e-42	169
AfisC3G08580	AT5G43270.1	130	49	2	111	225	114	243	50.77	9e-32	134
AfisC3G08580	AT5G43270.3	130	49	2	111	225	114	243	50.77	9e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	151	224	108.8	1.1e-31

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008361	P	regulation of cell size
GO:0009941	C	chloroplast envelope
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0044212	F	transcription regulatory region DNA binding
GO:0042127	P	regulation of cell proliferation
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	P	anther development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network