Detail information of AfisC3G08682


Location
GeneChrStartEndStrand
AfisC3G08682chr315436612621543669231+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrRWR94037.12.0e-91homeobox protein knotted-1-like protein 2 isoform X2
SwissprotQ84JS6.11.9e-78Protein KNAT6
trEMBLA0A3S3R1W31.4e-91Homeobox protein knotted-1-like protein 2 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G23380.160.081e-81 300KNAT6;KNAT6L;KNAT6SKNOTTED1-like homeobox gene 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag45175.t1
Allium fistulosumAfisC3G08682
Allium sativumAsa2G07204.1; Asa2G07205.1
Arabidopsis thalianaAT1G23380.1; AT1G23380.2; AT1G70510.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03790.10KNOX1Family7011065.32.7e-18
PF03791.10KNOX2Family12016579.41e-22
PF03789.10ELKDomain20923040.41.9e-10
PF05920.8Homeobox_KNFamily24928863.51.1e-17

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0001708Pcell fate specification
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0009536Cplastid
GO:0010051Pxylem and phloem pattern formation
GO:0010073Pmeristem maintenance
GO:0010089Pxylem development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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