result

Gene information

Detail information of AfisC3G08821

Location

Gene	Chr	Start	End	Strand
AfisC3G08821	chr3	1570860440	1570861945	-

Sequences

CDS

>AfisC3G08821
ATGCCTAATTGGAACAAGGGCCCACTTCTTGGGCGCGGCTCAACAGCCATCGTCTCCCTCGCTTCCGATCCCATCTCCGGCCAACTCTTCGCCGTTAAATCAGCAAGCCTCTCAAACTCCGGATTCCTTCAATATGAAAAGGGCGTTCATTCTTCCGTCTCTTCTCCTCACATAATCTCTTACTTGGGCTATGATTCAGACGCTGCCTTCTACAATCTCTTTCTTGAGTACGCCTCCGGTGGATCCATCTCCGACCTAATCCAAAAGCAAAAGCTTCAGGAATCCGAAATCAAATCCTTCGTGAAAGACATTTTGCTTGGATTGAGCCATCTACACTCCATGAAAATCGCCCATTGCGACATTAAATGTCAGAACATACTCATCTCTGGCGATGGAAGAGCGAAAATTGCAGATTTTGGTTGTGCAAAGTATATAGACTGCGATAATCAAATCAGGGCAAAGATAGGGGGAACGCCGATGTTCATGGCACCAGAGGTGGCCAGAGGAGAAGAGCAAGGACTGGTTTCAGATGTGTGGGCACTGGGATGCACAATTATAGAAATGGCAACAGGCAGAGCTCCATGGTTGAATGTATCGGATGCGGGTTCCCTTCTTTATCGGGTCGGATTCACAGAAGATCTTCCTGAAATCCCTGAATGGATTTCGGATGCTGGTAAGGAATTTTTGAGAATGTGTTTGGTGAAGGATGCTGGCAACAGGGCAACTGTCGATGAGTTGTTGAGGCATCCTTTCTTAACGGGTAGAGGTGTGGATGTAGGATACAAGTGGGTTACCCCAAGGAGTGTATTGGAGAGCAACACCTGGGATTCAGTATTTGAAAACGAACACGTAGTTGATTTCGGATCTGACCGGATGTCAGATTTGATAGGGTGTGAGGATGGACCCGAATGGAGCTGGGATGACAGCTGGCGTACAGTACGCAATGAATCATTGTTTACCTGTGTTACTGTCGTTAGTACGTTGGCTGCCGTTAGTGAAGAATCATCTGAGCTTAGGTTTGAAAATGAGTTGTTGGAGCATCCTTTCTTAACGGTTACGGATTTTGATACTGGAACCAAGCGGGCTACGCCTAAGTGCATACTGGATAGGATATTGGGCATGAGAGGTGTTGGCGACGGACCCAACTGGAGCTGGGATGGCAGCTGGGAAACAGTACGCAATGAATCATTGTTTAATACAGTTTTTGTTGCTAGTACTGCAACTGCTATTAGTGAAGAATTATCGGAATTTAGTAATGATAGCGAAGTATGTGATTATAGAGATGTTAATTATATGAATGCATGTAAAGAAGAAGTTGTGAATGTTTCTGAAATTTGTACAATGGACTTGGAGGATGATGATATAGAACCAATTATAATTGCAAATCATAATTTTGGTCTATTTGAAATTGGTTTAGTTATACATGTACTGATTGCTTATGGTTTTAAGATATTAGTATGTTTTGTTATAATAAAACGGGCGACAACTGGCAACTGGGAAGAGTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926215.1	9.7e-88	mitogen-activated protein kinase kinase kinase 18
Swissprot	Q9ZVP5.1	2.5e-64	Mitogen-activated protein kinase kinase kinase 18
trEMBL	A0A8K0MWL9	3.1e-88	Mitogen-activated protein kinase kinase kinase 18

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G26890.1	44.64	2e-72	270	MAPKKK16	mitogen-activated protein kinase kinase kinase 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08821	AT5G55090.1	346	158	9	3	316	5	346	43.93	1e-72	270
AfisC3G08821	AT4G26890.1	345	154	9	3	316	4	342	44.64	2e-72	270
AfisC3G08821	AT1G05100.1	294	143	6	3	280	2	293	45.24	5e-65	245

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	6	252	174.5	2.5e-51

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000747	P	conjugation with cellular fusion
GO:0000919	P	cell plate assembly
GO:0004702	F	receptor signaling protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0009524	C	phragmoplast
GO:0009793	P	embryo development ending in seed dormancy
GO:0010098	P	suspensor development
GO:0010103	P	stomatal complex morphogenesis
GO:0010200	P	response to chitin
GO:0010229	P	inflorescence development
GO:0031347	P	regulation of defense response
GO:0043410	P	positive regulation of MAPK cascade
GO:0043622	P	cortical microtubule organization
GO:0046777	P	protein autophosphorylation
GO:0048046	C	apoplast
GO:0071310	P	cellular response to organic substance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20716	MAPKKK17_18; mitogen-activated protein kinase kinase kinase 17/18	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network